Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
CLRN3Q8NCR9 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CLRN3Q8NCR9 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CLRN3Q8NCR9 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CLRN3Q8NCR9 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC14.6□□□□□ -0.07
CLRN3Q8NCR9 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CLRN3Q8NCR9 SDHAP1-207ENST00000440850 2000 ntBASIC14.59□□□□□ -0.07
CLRN3Q8NCR9 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLRN3Q8NCR9 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC14.59□□□□□ -0.07
CLRN3Q8NCR9 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC14.59□□□□□ -0.07
CLRN3Q8NCR9 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC14.59□□□□□ -0.07
CLRN3Q8NCR9 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC14.59□□□□□ -0.07
CLRN3Q8NCR9 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLRN3Q8NCR9 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CLRN3Q8NCR9 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
CLRN3Q8NCR9 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC14.59□□□□□ -0.07
CLRN3Q8NCR9 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLRN3Q8NCR9 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
CLRN3Q8NCR9 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CLRN3Q8NCR9 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CLRN3Q8NCR9 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
CLRN3Q8NCR9 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLRN3Q8NCR9 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC14.59□□□□□ -0.07
CLRN3Q8NCR9 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC14.59□□□□□ -0.07
CLRN3Q8NCR9 MIR4466-201ENST00000606121 54 ntBASIC14.59□□□□□ -0.07
CLRN3Q8NCR9 AL356652.1-201ENST00000615962 565 ntBASIC14.59□□□□□ -0.07
CLRN3Q8NCR9 RASSF1-AS1-201ENST00000629828 790 ntBASIC14.59□□□□□ -0.07
CLRN3Q8NCR9 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC14.59□□□□□ -0.07
CLRN3Q8NCR9 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC14.59□□□□□ -0.07
CLRN3Q8NCR9 STK24-203ENST00000397517 4578 ntTSL 2 BASIC14.59□□□□□ -0.07
CLRN3Q8NCR9 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLRN3Q8NCR9 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC14.59□□□□□ -0.07
CLRN3Q8NCR9 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC14.59□□□□□ -0.07
CLRN3Q8NCR9 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC14.59□□□□□ -0.07
CLRN3Q8NCR9 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CLRN3Q8NCR9 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLRN3Q8NCR9 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC14.59□□□□□ -0.07
CLRN3Q8NCR9 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC14.59□□□□□ -0.07
CLRN3Q8NCR9 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC14.59□□□□□ -0.07
CLRN3Q8NCR9 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC14.59□□□□□ -0.07
CLRN3Q8NCR9 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC14.59□□□□□ -0.07
CLRN3Q8NCR9 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
CLRN3Q8NCR9 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLRN3Q8NCR9 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CLRN3Q8NCR9 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CLRN3Q8NCR9 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC14.59□□□□□ -0.07
CLRN3Q8NCR9 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CLRN3Q8NCR9 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLRN3Q8NCR9 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLRN3Q8NCR9 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
CLRN3Q8NCR9 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
CLRN3Q8NCR9 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.07
CLRN3Q8NCR9 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.07
CLRN3Q8NCR9 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.07
CLRN3Q8NCR9 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.07
CLRN3Q8NCR9 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
CLRN3Q8NCR9 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
CLRN3Q8NCR9 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC14.58□□□□□ -0.08
CLRN3Q8NCR9 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CLRN3Q8NCR9 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CLRN3Q8NCR9 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC14.58□□□□□ -0.08
CLRN3Q8NCR9 PGM5P4-201ENST00000421970 445 ntBASIC14.58□□□□□ -0.08
CLRN3Q8NCR9 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC14.58□□□□□ -0.08
CLRN3Q8NCR9 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC14.58□□□□□ -0.08
CLRN3Q8NCR9 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC14.58□□□□□ -0.08
CLRN3Q8NCR9 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC14.58□□□□□ -0.08
CLRN3Q8NCR9 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC14.58□□□□□ -0.08
CLRN3Q8NCR9 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC14.58□□□□□ -0.08
CLRN3Q8NCR9 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC14.58□□□□□ -0.08
CLRN3Q8NCR9 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CLRN3Q8NCR9 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
CLRN3Q8NCR9 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CLRN3Q8NCR9 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CLRN3Q8NCR9 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CLRN3Q8NCR9 DBET-201ENST00000630918 3363 ntBASIC14.58□□□□□ -0.08
CLRN3Q8NCR9 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CLRN3Q8NCR9 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CLRN3Q8NCR9 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CLRN3Q8NCR9 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CLRN3Q8NCR9 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CLRN3Q8NCR9 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CLRN3Q8NCR9 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
CLRN3Q8NCR9 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN3Q8NCR9 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN3Q8NCR9 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC14.57□□□□□ -0.08
CLRN3Q8NCR9 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN3Q8NCR9 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN3Q8NCR9 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN3Q8NCR9 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
CLRN3Q8NCR9 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN3Q8NCR9 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN3Q8NCR9 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC14.57□□□□□ -0.08
CLRN3Q8NCR9 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC14.57□□□□□ -0.08
CLRN3Q8NCR9 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN3Q8NCR9 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC14.57□□□□□ -0.08
CLRN3Q8NCR9 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN3Q8NCR9 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN3Q8NCR9 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC14.57□□□□□ -0.08
CLRN3Q8NCR9 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC14.57□□□□□ -0.08
CLRN3Q8NCR9 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms