Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
VPS52Q8N1B4 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS52Q8N1B4 AC090616.6-201ENST00000582640 721 ntBASIC19.81■□□□□ 0.76
VPS52Q8N1B4 IGHV3-41-201ENST00000613121 348 ntBASIC19.81■□□□□ 0.76
VPS52Q8N1B4 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC19.81■□□□□ 0.76
VPS52Q8N1B4 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS52Q8N1B4 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC19.81■□□□□ 0.76
VPS52Q8N1B4 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS52Q8N1B4 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS52Q8N1B4 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS52Q8N1B4 IRX1P1-201ENST00000438849 1838 ntBASIC19.81■□□□□ 0.76
VPS52Q8N1B4 UBQLN4P1-201ENST00000461599 1801 ntBASIC19.81■□□□□ 0.76
VPS52Q8N1B4 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS52Q8N1B4 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS52Q8N1B4 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
VPS52Q8N1B4 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
VPS52Q8N1B4 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS52Q8N1B4 AC006333.2-201ENST00000607957 2099 ntBASIC19.8■□□□□ 0.76
VPS52Q8N1B4 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS52Q8N1B4 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS52Q8N1B4 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS52Q8N1B4 PBK-203ENST00000522944 1499 ntTSL 2 BASIC19.8■□□□□ 0.76
VPS52Q8N1B4 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC19.8■□□□□ 0.76
VPS52Q8N1B4 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS52Q8N1B4 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS52Q8N1B4 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS52Q8N1B4 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC19.8■□□□□ 0.76
VPS52Q8N1B4 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS52Q8N1B4 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS52Q8N1B4 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC19.8■□□□□ 0.76
VPS52Q8N1B4 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC19.8■□□□□ 0.76
VPS52Q8N1B4 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS52Q8N1B4 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC19.8■□□□□ 0.76
VPS52Q8N1B4 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VPS52Q8N1B4 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC19.8■□□□□ 0.76
VPS52Q8N1B4 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
VPS52Q8N1B4 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC19.8■□□□□ 0.76
VPS52Q8N1B4 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC19.8■□□□□ 0.76
VPS52Q8N1B4 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC19.8■□□□□ 0.76
VPS52Q8N1B4 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VPS52Q8N1B4 LINC01711-201ENST00000598340 967 ntBASIC19.8■□□□□ 0.76
VPS52Q8N1B4 AL390719.2-201ENST00000606993 987 ntBASIC19.8■□□□□ 0.76
VPS52Q8N1B4 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
VPS52Q8N1B4 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC19.8■□□□□ 0.76
VPS52Q8N1B4 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS52Q8N1B4 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS52Q8N1B4 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VPS52Q8N1B4 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
VPS52Q8N1B4 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS52Q8N1B4 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
VPS52Q8N1B4 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC19.8■□□□□ 0.76
VPS52Q8N1B4 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
VPS52Q8N1B4 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS52Q8N1B4 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS52Q8N1B4 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
VPS52Q8N1B4 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC19.79■□□□□ 0.76
VPS52Q8N1B4 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS52Q8N1B4 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS52Q8N1B4 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS52Q8N1B4 AC141586.3-201ENST00000562166 1838 ntBASIC19.79■□□□□ 0.76
VPS52Q8N1B4 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS52Q8N1B4 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS52Q8N1B4 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
VPS52Q8N1B4 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS52Q8N1B4 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS52Q8N1B4 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS52Q8N1B4 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS52Q8N1B4 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC19.79■□□□□ 0.76
VPS52Q8N1B4 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC19.79■□□□□ 0.76
VPS52Q8N1B4 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC19.79■□□□□ 0.76
VPS52Q8N1B4 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS52Q8N1B4 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC19.79■□□□□ 0.76
VPS52Q8N1B4 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC19.79■□□□□ 0.76
VPS52Q8N1B4 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC19.79■□□□□ 0.76
VPS52Q8N1B4 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS52Q8N1B4 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS52Q8N1B4 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS52Q8N1B4 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS52Q8N1B4 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS52Q8N1B4 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS52Q8N1B4 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS52Q8N1B4 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC19.78■□□□□ 0.76
VPS52Q8N1B4 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VPS52Q8N1B4 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VPS52Q8N1B4 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VPS52Q8N1B4 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS52Q8N1B4 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS52Q8N1B4 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS52Q8N1B4 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
VPS52Q8N1B4 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VPS52Q8N1B4 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS52Q8N1B4 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS52Q8N1B4 AC009078.2-202ENST00000463353 338 ntBASIC19.78■□□□□ 0.76
VPS52Q8N1B4 AC104819.1-201ENST00000504587 486 ntBASIC19.78■□□□□ 0.76
VPS52Q8N1B4 KRT18P31-201ENST00000506277 1292 ntBASIC19.78■□□□□ 0.76
VPS52Q8N1B4 MIR3180-4-201ENST00000582223 153 ntBASIC19.78■□□□□ 0.76
VPS52Q8N1B4 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC19.78■□□□□ 0.76
VPS52Q8N1B4 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC19.78■□□□□ 0.76
VPS52Q8N1B4 AL031008.1-201ENST00000619963 541 ntBASIC19.78■□□□□ 0.76
VPS52Q8N1B4 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 65 ms