Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC24.27■■□□□ 1.48
USP54Q70EL1 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
USP54Q70EL1 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC24.27■■□□□ 1.48
USP54Q70EL1 Z83851.2-201ENST00000609564 659 ntBASIC24.27■■□□□ 1.48
USP54Q70EL1 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
USP54Q70EL1 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC24.27■■□□□ 1.48
USP54Q70EL1 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC24.27■■□□□ 1.48
USP54Q70EL1 AC107918.4-202ENST00000641623 219 ntBASIC24.27■■□□□ 1.48
USP54Q70EL1 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC24.27■■□□□ 1.48
USP54Q70EL1 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
USP54Q70EL1 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC24.27■■□□□ 1.48
USP54Q70EL1 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC24.27■■□□□ 1.48
USP54Q70EL1 ESPNP-201ENST00000270691 2015 ntBASIC24.26■■□□□ 1.47
USP54Q70EL1 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
USP54Q70EL1 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC24.26■■□□□ 1.47
USP54Q70EL1 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC24.26■■□□□ 1.47
USP54Q70EL1 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC24.26■■□□□ 1.47
USP54Q70EL1 AC093909.1-201ENST00000504731 1122 ntBASIC24.26■■□□□ 1.47
USP54Q70EL1 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
USP54Q70EL1 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
USP54Q70EL1 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC24.26■■□□□ 1.47
USP54Q70EL1 ETFA-208ENST00000559602 792 ntTSL 3 BASIC24.26■■□□□ 1.47
USP54Q70EL1 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC24.26■■□□□ 1.47
USP54Q70EL1 AC116407.3-201ENST00000623905 1129 ntBASIC24.26■■□□□ 1.47
USP54Q70EL1 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC24.26■■□□□ 1.47
USP54Q70EL1 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
USP54Q70EL1 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC24.25■■□□□ 1.47
USP54Q70EL1 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
USP54Q70EL1 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC24.25■■□□□ 1.47
USP54Q70EL1 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
USP54Q70EL1 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
USP54Q70EL1 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
USP54Q70EL1 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
USP54Q70EL1 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC24.25■■□□□ 1.47
USP54Q70EL1 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC24.25■■□□□ 1.47
USP54Q70EL1 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
USP54Q70EL1 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC24.25■■□□□ 1.47
USP54Q70EL1 RPL13AP23-201ENST00000480739 586 ntBASIC24.25■■□□□ 1.47
USP54Q70EL1 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC24.25■■□□□ 1.47
USP54Q70EL1 NMU-202ENST00000505262 693 ntTSL 3 BASIC24.25■■□□□ 1.47
USP54Q70EL1 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
USP54Q70EL1 MTDHP4-201ENST00000600287 670 ntBASIC24.25■■□□□ 1.47
USP54Q70EL1 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
USP54Q70EL1 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC24.25■■□□□ 1.47
USP54Q70EL1 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
USP54Q70EL1 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC24.25■■□□□ 1.47
USP54Q70EL1 PCDHAC2-203ENST00000615316 3011 ntBASIC24.25■■□□□ 1.47
USP54Q70EL1 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
USP54Q70EL1 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC24.25■■□□□ 1.47
USP54Q70EL1 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC24.25■■□□□ 1.47
USP54Q70EL1 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC24.25■■□□□ 1.47
USP54Q70EL1 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
USP54Q70EL1 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC24.25■■□□□ 1.47
USP54Q70EL1 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC24.24■■□□□ 1.47
USP54Q70EL1 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
USP54Q70EL1 BX842568.4-201ENST00000421222 227 ntBASIC24.24■■□□□ 1.47
USP54Q70EL1 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC24.24■■□□□ 1.47
USP54Q70EL1 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC24.24■■□□□ 1.47
USP54Q70EL1 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
USP54Q70EL1 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
USP54Q70EL1 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC24.24■■□□□ 1.47
USP54Q70EL1 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC24.24■■□□□ 1.47
USP54Q70EL1 AC005082.1-201ENST00000413042 2259 ntBASIC24.24■■□□□ 1.47
USP54Q70EL1 AC116562.4-201ENST00000641316 2276 ntBASIC24.24■■□□□ 1.47
USP54Q70EL1 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
USP54Q70EL1 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
USP54Q70EL1 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
USP54Q70EL1 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC24.24■■□□□ 1.47
USP54Q70EL1 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC24.24■■□□□ 1.47
USP54Q70EL1 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
USP54Q70EL1 LAGE3P1-201ENST00000425356 484 ntBASIC24.24■■□□□ 1.47
USP54Q70EL1 AC122714.2-201ENST00000502787 707 ntBASIC24.24■■□□□ 1.47
USP54Q70EL1 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC24.24■■□□□ 1.47
USP54Q70EL1 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
USP54Q70EL1 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
USP54Q70EL1 AD001527.2-201ENST00000622994 785 ntBASIC24.24■■□□□ 1.47
USP54Q70EL1 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
USP54Q70EL1 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
USP54Q70EL1 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC24.23■■□□□ 1.47
USP54Q70EL1 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC24.23■■□□□ 1.47
USP54Q70EL1 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
USP54Q70EL1 PMPCAP1-201ENST00000508114 1576 ntBASIC24.23■■□□□ 1.47
USP54Q70EL1 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC24.23■■□□□ 1.47
USP54Q70EL1 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC24.23■■□□□ 1.47
USP54Q70EL1 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC24.23■■□□□ 1.47
USP54Q70EL1 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC24.23■■□□□ 1.47
USP54Q70EL1 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC24.23■■□□□ 1.47
USP54Q70EL1 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC24.23■■□□□ 1.47
USP54Q70EL1 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC24.23■■□□□ 1.47
USP54Q70EL1 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC24.23■■□□□ 1.47
USP54Q70EL1 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
USP54Q70EL1 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
USP54Q70EL1 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC24.23■■□□□ 1.47
USP54Q70EL1 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
USP54Q70EL1 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC24.22■■□□□ 1.47
USP54Q70EL1 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
USP54Q70EL1 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
USP54Q70EL1 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC24.22■■□□□ 1.47
USP54Q70EL1 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC24.22■■□□□ 1.47
USP54Q70EL1 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms