Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CTR9Q6PD62 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
CTR9Q6PD62 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC21.67■■□□□ 1.06
CTR9Q6PD62 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC21.67■■□□□ 1.06
CTR9Q6PD62 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CTR9Q6PD62 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CTR9Q6PD62 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CTR9Q6PD62 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC21.67■■□□□ 1.06
CTR9Q6PD62 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC21.67■■□□□ 1.06
CTR9Q6PD62 RN7SL606P-201ENST00000472779 293 ntBASIC21.67■■□□□ 1.06
CTR9Q6PD62 AC113404.2-201ENST00000507884 177 ntBASIC21.67■■□□□ 1.06
CTR9Q6PD62 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC21.67■■□□□ 1.06
CTR9Q6PD62 TOLLIP-AS1-201ENST00000530897 939 ntBASIC21.67■■□□□ 1.06
CTR9Q6PD62 TPSP2-201ENST00000561760 610 ntBASIC21.67■■□□□ 1.06
CTR9Q6PD62 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
CTR9Q6PD62 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
CTR9Q6PD62 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CTR9Q6PD62 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CTR9Q6PD62 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
CTR9Q6PD62 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC21.66■■□□□ 1.06
CTR9Q6PD62 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CTR9Q6PD62 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CTR9Q6PD62 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CTR9Q6PD62 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC21.66■■□□□ 1.06
CTR9Q6PD62 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC21.66■■□□□ 1.06
CTR9Q6PD62 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
CTR9Q6PD62 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC21.66■■□□□ 1.06
CTR9Q6PD62 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC21.66■■□□□ 1.06
CTR9Q6PD62 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CTR9Q6PD62 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CTR9Q6PD62 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC21.66■■□□□ 1.06
CTR9Q6PD62 DRAXINP1-201ENST00000437611 948 ntBASIC21.66■■□□□ 1.06
CTR9Q6PD62 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CTR9Q6PD62 AC090616.6-201ENST00000582640 721 ntBASIC21.66■■□□□ 1.06
CTR9Q6PD62 CLEC4GP1-201ENST00000596555 870 ntBASIC21.66■■□□□ 1.06
CTR9Q6PD62 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CTR9Q6PD62 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CTR9Q6PD62 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
CTR9Q6PD62 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CTR9Q6PD62 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
CTR9Q6PD62 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CTR9Q6PD62 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC21.66■■□□□ 1.06
CTR9Q6PD62 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
CTR9Q6PD62 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CTR9Q6PD62 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
CTR9Q6PD62 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CTR9Q6PD62 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC21.65■■□□□ 1.06
CTR9Q6PD62 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
CTR9Q6PD62 AC073592.3-201ENST00000625118 1834 ntBASIC21.65■■□□□ 1.06
CTR9Q6PD62 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
CTR9Q6PD62 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
CTR9Q6PD62 PPIH-202ENST00000372549 327 ntTSL 3 BASIC21.65■■□□□ 1.06
CTR9Q6PD62 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
CTR9Q6PD62 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CTR9Q6PD62 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC21.65■■□□□ 1.06
CTR9Q6PD62 IL11-204ENST00000590625 1028 ntTSL 2 BASIC21.65■■□□□ 1.06
CTR9Q6PD62 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
CTR9Q6PD62 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CTR9Q6PD62 IGHV3-41-201ENST00000613121 348 ntBASIC21.65■■□□□ 1.06
CTR9Q6PD62 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
CTR9Q6PD62 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CTR9Q6PD62 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CTR9Q6PD62 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CTR9Q6PD62 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
CTR9Q6PD62 USP49-202ENST00000373010 2446 ntTSL 5 BASIC21.65■■□□□ 1.06
CTR9Q6PD62 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC21.65■■□□□ 1.06
CTR9Q6PD62 PODN-203ENST00000395871 2744 ntTSL 5 BASIC21.64■■□□□ 1.06
CTR9Q6PD62 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC21.64■■□□□ 1.06
CTR9Q6PD62 WIZP1-201ENST00000531444 2299 ntBASIC21.64■■□□□ 1.06
CTR9Q6PD62 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CTR9Q6PD62 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
CTR9Q6PD62 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
CTR9Q6PD62 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CTR9Q6PD62 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CTR9Q6PD62 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CTR9Q6PD62 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC21.64■■□□□ 1.05
CTR9Q6PD62 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CTR9Q6PD62 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC21.64■■□□□ 1.05
CTR9Q6PD62 DUSP5P1-201ENST00000441325 1139 ntBASIC21.64■■□□□ 1.05
CTR9Q6PD62 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC21.64■■□□□ 1.05
CTR9Q6PD62 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC21.64■■□□□ 1.05
CTR9Q6PD62 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
CTR9Q6PD62 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CTR9Q6PD62 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CTR9Q6PD62 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CTR9Q6PD62 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC21.63■■□□□ 1.05
CTR9Q6PD62 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CTR9Q6PD62 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC21.63■■□□□ 1.05
CTR9Q6PD62 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC21.63■■□□□ 1.05
CTR9Q6PD62 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC21.63■■□□□ 1.05
CTR9Q6PD62 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CTR9Q6PD62 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
CTR9Q6PD62 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CTR9Q6PD62 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CTR9Q6PD62 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
CTR9Q6PD62 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CTR9Q6PD62 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
CTR9Q6PD62 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC21.63■■□□□ 1.05
CTR9Q6PD62 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC21.63■■□□□ 1.05
CTR9Q6PD62 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms