Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
USF3Q68DE3 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
USF3Q68DE3 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
USF3Q68DE3 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
USF3Q68DE3 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
USF3Q68DE3 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
USF3Q68DE3 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC15.7■□□□□ 0.1
USF3Q68DE3 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
USF3Q68DE3 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC15.7■□□□□ 0.1
USF3Q68DE3 BAALC-202ENST00000306391 243 ntTSL 5 BASIC15.7■□□□□ 0.1
USF3Q68DE3 BAALC-204ENST00000330955 222 ntTSL 5 BASIC15.7■□□□□ 0.1
USF3Q68DE3 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC15.7■□□□□ 0.1
USF3Q68DE3 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC15.7■□□□□ 0.1
USF3Q68DE3 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
USF3Q68DE3 BMF-207ENST00000559701 630 ntTSL 3 BASIC15.7■□□□□ 0.1
USF3Q68DE3 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC15.7■□□□□ 0.1
USF3Q68DE3 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC15.7■□□□□ 0.1
USF3Q68DE3 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
USF3Q68DE3 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
USF3Q68DE3 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC15.69■□□□□ 0.1
USF3Q68DE3 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
USF3Q68DE3 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
USF3Q68DE3 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
USF3Q68DE3 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
USF3Q68DE3 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
USF3Q68DE3 USP49-202ENST00000373010 2446 ntTSL 5 BASIC15.69■□□□□ 0.1
USF3Q68DE3 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC15.69■□□□□ 0.1
USF3Q68DE3 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
USF3Q68DE3 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
USF3Q68DE3 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
USF3Q68DE3 MIR564-202ENST00000385049 94 ntBASIC15.69■□□□□ 0.1
USF3Q68DE3 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
USF3Q68DE3 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC15.69■□□□□ 0.1
USF3Q68DE3 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
USF3Q68DE3 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
USF3Q68DE3 GXYLT1P4-201ENST00000613576 1192 ntBASIC15.69■□□□□ 0.1
USF3Q68DE3 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC15.69■□□□□ 0.1
USF3Q68DE3 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC15.69■□□□□ 0.1
USF3Q68DE3 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC15.69■□□□□ 0.1
USF3Q68DE3 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
USF3Q68DE3 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
USF3Q68DE3 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
USF3Q68DE3 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
USF3Q68DE3 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
USF3Q68DE3 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
USF3Q68DE3 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
USF3Q68DE3 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC15.69■□□□□ 0.1
USF3Q68DE3 RCC2P3-201ENST00000418112 1537 ntBASIC15.69■□□□□ 0.1
USF3Q68DE3 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
USF3Q68DE3 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
USF3Q68DE3 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
USF3Q68DE3 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
USF3Q68DE3 AL390719.2-201ENST00000606993 987 ntBASIC15.68■□□□□ 0.1
USF3Q68DE3 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC15.68■□□□□ 0.1
USF3Q68DE3 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
USF3Q68DE3 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
USF3Q68DE3 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC15.68■□□□□ 0.1
USF3Q68DE3 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
USF3Q68DE3 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
USF3Q68DE3 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
USF3Q68DE3 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
USF3Q68DE3 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
USF3Q68DE3 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
USF3Q68DE3 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
USF3Q68DE3 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
USF3Q68DE3 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
USF3Q68DE3 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
USF3Q68DE3 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
USF3Q68DE3 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
USF3Q68DE3 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
USF3Q68DE3 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC15.68■□□□□ 0.1
USF3Q68DE3 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
USF3Q68DE3 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
USF3Q68DE3 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
USF3Q68DE3 MRPL3P1-201ENST00000400109 1033 ntBASIC15.68■□□□□ 0.1
USF3Q68DE3 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC15.68■□□□□ 0.1
USF3Q68DE3 FOSL1P1-201ENST00000511041 816 ntBASIC15.68■□□□□ 0.1
USF3Q68DE3 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
USF3Q68DE3 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC15.68■□□□□ 0.1
USF3Q68DE3 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC15.68■□□□□ 0.1
USF3Q68DE3 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC15.68■□□□□ 0.1
USF3Q68DE3 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
USF3Q68DE3 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
USF3Q68DE3 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
USF3Q68DE3 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
USF3Q68DE3 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC15.68■□□□□ 0.1
USF3Q68DE3 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
USF3Q68DE3 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
USF3Q68DE3 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
USF3Q68DE3 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC15.67■□□□□ 0.1
USF3Q68DE3 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
USF3Q68DE3 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
USF3Q68DE3 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
USF3Q68DE3 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
USF3Q68DE3 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
USF3Q68DE3 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
USF3Q68DE3 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
USF3Q68DE3 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC15.67■□□□□ 0.1
USF3Q68DE3 AC104390.1-201ENST00000555663 520 ntBASIC15.67■□□□□ 0.1
USF3Q68DE3 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms