Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC22.3■■□□□ 1.16
CCDC88AQ3V6T2 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CCDC88AQ3V6T2 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC22.3■■□□□ 1.16
CCDC88AQ3V6T2 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CCDC88AQ3V6T2 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC22.3■■□□□ 1.16
CCDC88AQ3V6T2 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC22.3■■□□□ 1.16
CCDC88AQ3V6T2 AC116562.4-201ENST00000641316 2276 ntBASIC22.29■■□□□ 1.16
CCDC88AQ3V6T2 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
CCDC88AQ3V6T2 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
CCDC88AQ3V6T2 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC22.29■■□□□ 1.16
CCDC88AQ3V6T2 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CCDC88AQ3V6T2 RPS2P28-201ENST00000314255 741 ntBASIC22.29■■□□□ 1.16
CCDC88AQ3V6T2 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC22.29■■□□□ 1.16
CCDC88AQ3V6T2 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
CCDC88AQ3V6T2 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC22.29■■□□□ 1.16
CCDC88AQ3V6T2 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC22.29■■□□□ 1.16
CCDC88AQ3V6T2 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC22.29■■□□□ 1.16
CCDC88AQ3V6T2 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
CCDC88AQ3V6T2 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC22.29■■□□□ 1.16
CCDC88AQ3V6T2 USP39-202ENST00000409025 1946 ntTSL 5 BASIC22.29■■□□□ 1.16
CCDC88AQ3V6T2 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CCDC88AQ3V6T2 AL035633.1-201ENST00000406139 838 ntBASIC22.28■■□□□ 1.16
CCDC88AQ3V6T2 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC22.28■■□□□ 1.16
CCDC88AQ3V6T2 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
CCDC88AQ3V6T2 SPCS2P1-201ENST00000561636 679 ntBASIC22.28■■□□□ 1.16
CCDC88AQ3V6T2 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CCDC88AQ3V6T2 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CCDC88AQ3V6T2 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CCDC88AQ3V6T2 SNAI3-AS1-205ENST00000568633 2096 ntBASIC22.28■■□□□ 1.16
CCDC88AQ3V6T2 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CCDC88AQ3V6T2 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CCDC88AQ3V6T2 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
CCDC88AQ3V6T2 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CCDC88AQ3V6T2 NARF-204ENST00000390006 1766 ntTSL 2 BASIC22.28■■□□□ 1.16
CCDC88AQ3V6T2 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CCDC88AQ3V6T2 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC22.28■■□□□ 1.16
CCDC88AQ3V6T2 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
CCDC88AQ3V6T2 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CCDC88AQ3V6T2 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
CCDC88AQ3V6T2 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
CCDC88AQ3V6T2 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC22.28■■□□□ 1.16
CCDC88AQ3V6T2 UNC93B6-202ENST00000528242 690 ntBASIC22.28■■□□□ 1.16
CCDC88AQ3V6T2 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC22.28■■□□□ 1.16
CCDC88AQ3V6T2 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC22.28■■□□□ 1.16
CCDC88AQ3V6T2 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CCDC88AQ3V6T2 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC22.27■■□□□ 1.16
CCDC88AQ3V6T2 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CCDC88AQ3V6T2 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
CCDC88AQ3V6T2 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CCDC88AQ3V6T2 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CCDC88AQ3V6T2 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
CCDC88AQ3V6T2 AP002414.3-201ENST00000589352 1468 ntBASIC22.27■■□□□ 1.16
CCDC88AQ3V6T2 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CCDC88AQ3V6T2 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC22.27■■□□□ 1.16
CCDC88AQ3V6T2 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CCDC88AQ3V6T2 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CCDC88AQ3V6T2 PNMT-202ENST00000394246 821 ntTSL 2 BASIC22.27■■□□□ 1.16
CCDC88AQ3V6T2 RFPL4AP1-201ENST00000530883 850 ntBASIC22.27■■□□□ 1.16
CCDC88AQ3V6T2 MIR3197-201ENST00000582241 73 ntBASIC22.27■■□□□ 1.16
CCDC88AQ3V6T2 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CCDC88AQ3V6T2 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CCDC88AQ3V6T2 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CCDC88AQ3V6T2 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC22.27■■□□□ 1.16
CCDC88AQ3V6T2 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CCDC88AQ3V6T2 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CCDC88AQ3V6T2 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC22.27■■□□□ 1.16
CCDC88AQ3V6T2 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CCDC88AQ3V6T2 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CCDC88AQ3V6T2 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC22.27■■□□□ 1.16
CCDC88AQ3V6T2 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC22.27■■□□□ 1.15
CCDC88AQ3V6T2 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
CCDC88AQ3V6T2 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC88AQ3V6T2 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC88AQ3V6T2 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC22.26■■□□□ 1.15
CCDC88AQ3V6T2 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC88AQ3V6T2 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC88AQ3V6T2 HTR5BP-201ENST00000430851 1154 ntBASIC22.26■■□□□ 1.15
CCDC88AQ3V6T2 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC22.26■■□□□ 1.15
CCDC88AQ3V6T2 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC22.26■■□□□ 1.15
CCDC88AQ3V6T2 AL596442.2-201ENST00000610240 980 ntBASIC22.26■■□□□ 1.15
CCDC88AQ3V6T2 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC88AQ3V6T2 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC22.26■■□□□ 1.15
CCDC88AQ3V6T2 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC88AQ3V6T2 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
CCDC88AQ3V6T2 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC22.26■■□□□ 1.15
CCDC88AQ3V6T2 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC88AQ3V6T2 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
CCDC88AQ3V6T2 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC88AQ3V6T2 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC88AQ3V6T2 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC88AQ3V6T2 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC88AQ3V6T2 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC22.26■■□□□ 1.15
CCDC88AQ3V6T2 CYMP-203ENST00000474680 1263 ntBASIC22.26■■□□□ 1.15
CCDC88AQ3V6T2 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC22.26■■□□□ 1.15
CCDC88AQ3V6T2 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC88AQ3V6T2 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC22.26■■□□□ 1.15
CCDC88AQ3V6T2 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC22.26■■□□□ 1.15
CCDC88AQ3V6T2 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC22.26■■□□□ 1.15
CCDC88AQ3V6T2 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC88AQ3V6T2 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms