Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC144BQ3MJ40 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC21.22■□□□□ 0.99
CCDC144BQ3MJ40 AC112497.1-201ENST00000624824 639 ntBASIC21.22■□□□□ 0.99
CCDC144BQ3MJ40 AL157888.1-201ENST00000631930 593 ntBASIC21.22■□□□□ 0.99
CCDC144BQ3MJ40 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
CCDC144BQ3MJ40 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC21.22■□□□□ 0.99
CCDC144BQ3MJ40 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC21.22■□□□□ 0.99
CCDC144BQ3MJ40 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC21.22■□□□□ 0.99
CCDC144BQ3MJ40 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC21.22■□□□□ 0.99
CCDC144BQ3MJ40 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC21.22■□□□□ 0.99
CCDC144BQ3MJ40 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC144BQ3MJ40 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC144BQ3MJ40 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC144BQ3MJ40 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC144BQ3MJ40 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
CCDC144BQ3MJ40 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC144BQ3MJ40 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC144BQ3MJ40 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC144BQ3MJ40 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
CCDC144BQ3MJ40 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC144BQ3MJ40 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC144BQ3MJ40 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC144BQ3MJ40 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
CCDC144BQ3MJ40 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC144BQ3MJ40 AP002383.4-201ENST00000442518 975 ntBASIC21.21■□□□□ 0.99
CCDC144BQ3MJ40 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC144BQ3MJ40 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
CCDC144BQ3MJ40 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC144BQ3MJ40 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
CCDC144BQ3MJ40 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC21.21■□□□□ 0.99
CCDC144BQ3MJ40 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC21.21■□□□□ 0.99
CCDC144BQ3MJ40 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
CCDC144BQ3MJ40 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC144BQ3MJ40 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC144BQ3MJ40 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC144BQ3MJ40 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC144BQ3MJ40 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC144BQ3MJ40 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC144BQ3MJ40 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC144BQ3MJ40 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC144BQ3MJ40 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
CCDC144BQ3MJ40 CD276-203ENST00000537340 2439 ntTSL 2 BASIC21.2■□□□□ 0.99
CCDC144BQ3MJ40 MADD-208ENST00000405573 1823 ntTSL 5 BASIC21.2■□□□□ 0.98
CCDC144BQ3MJ40 PXK-206ENST00000463280 2825 ntTSL 2 BASIC21.2■□□□□ 0.98
CCDC144BQ3MJ40 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC144BQ3MJ40 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC144BQ3MJ40 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC144BQ3MJ40 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC144BQ3MJ40 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC21.2■□□□□ 0.98
CCDC144BQ3MJ40 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC21.2■□□□□ 0.98
CCDC144BQ3MJ40 HLA-F-220ENST00000434407 884 ntBASIC21.2■□□□□ 0.98
CCDC144BQ3MJ40 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC21.2■□□□□ 0.98
CCDC144BQ3MJ40 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC21.2■□□□□ 0.98
CCDC144BQ3MJ40 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC21.2■□□□□ 0.98
CCDC144BQ3MJ40 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC144BQ3MJ40 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
CCDC144BQ3MJ40 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC21.2■□□□□ 0.98
CCDC144BQ3MJ40 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
CCDC144BQ3MJ40 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC144BQ3MJ40 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC144BQ3MJ40 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC144BQ3MJ40 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC21.2■□□□□ 0.98
CCDC144BQ3MJ40 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC144BQ3MJ40 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC144BQ3MJ40 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC144BQ3MJ40 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC21.19■□□□□ 0.98
CCDC144BQ3MJ40 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC144BQ3MJ40 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC21.19■□□□□ 0.98
CCDC144BQ3MJ40 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
CCDC144BQ3MJ40 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC144BQ3MJ40 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC21.19■□□□□ 0.98
CCDC144BQ3MJ40 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC144BQ3MJ40 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC144BQ3MJ40 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC144BQ3MJ40 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC21.19■□□□□ 0.98
CCDC144BQ3MJ40 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC21.19■□□□□ 0.98
CCDC144BQ3MJ40 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC21.19■□□□□ 0.98
CCDC144BQ3MJ40 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC144BQ3MJ40 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC21.19■□□□□ 0.98
CCDC144BQ3MJ40 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC21.19■□□□□ 0.98
CCDC144BQ3MJ40 RN7SL510P-201ENST00000581311 263 ntBASIC21.19■□□□□ 0.98
CCDC144BQ3MJ40 SPEG-225ENST00000617028 815 ntTSL 5 BASIC21.19■□□□□ 0.98
CCDC144BQ3MJ40 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC21.19■□□□□ 0.98
CCDC144BQ3MJ40 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC144BQ3MJ40 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
CCDC144BQ3MJ40 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC144BQ3MJ40 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC21.19■□□□□ 0.98
CCDC144BQ3MJ40 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC21.19■□□□□ 0.98
CCDC144BQ3MJ40 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
CCDC144BQ3MJ40 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC144BQ3MJ40 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC144BQ3MJ40 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC144BQ3MJ40 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC144BQ3MJ40 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC144BQ3MJ40 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC144BQ3MJ40 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
CCDC144BQ3MJ40 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC21.18■□□□□ 0.98
CCDC144BQ3MJ40 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
CCDC144BQ3MJ40 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
CCDC144BQ3MJ40 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms