Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC17.64■□□□□ 0.41
PCDH1Q08174 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.64■□□□□ 0.41
PCDH1Q08174 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
PCDH1Q08174 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PCDH1Q08174 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
PCDH1Q08174 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PCDH1Q08174 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
PCDH1Q08174 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
PCDH1Q08174 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
PCDH1Q08174 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
PCDH1Q08174 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
PCDH1Q08174 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PCDH1Q08174 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
PCDH1Q08174 AL096828.2-201ENST00000567259 1965 ntBASIC17.64■□□□□ 0.41
PCDH1Q08174 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PCDH1Q08174 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PCDH1Q08174 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PCDH1Q08174 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.64■□□□□ 0.41
PCDH1Q08174 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PCDH1Q08174 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
PCDH1Q08174 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
PCDH1Q08174 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
PCDH1Q08174 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC17.63■□□□□ 0.41
PCDH1Q08174 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PCDH1Q08174 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
PCDH1Q08174 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PCDH1Q08174 Telomerase-vert.1-201ENST00000363312 438 ntBASIC17.63■□□□□ 0.41
PCDH1Q08174 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
PCDH1Q08174 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC17.63■□□□□ 0.41
PCDH1Q08174 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC17.63■□□□□ 0.41
PCDH1Q08174 SLC25A3P1-201ENST00000443844 931 ntBASIC17.63■□□□□ 0.41
PCDH1Q08174 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC17.63■□□□□ 0.41
PCDH1Q08174 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
PCDH1Q08174 AC024243.1-201ENST00000609234 778 ntBASIC17.63■□□□□ 0.41
PCDH1Q08174 AC092865.7-201ENST00000641832 219 ntBASIC17.63■□□□□ 0.41
PCDH1Q08174 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PCDH1Q08174 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC17.63■□□□□ 0.41
PCDH1Q08174 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.63■□□□□ 0.41
PCDH1Q08174 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PCDH1Q08174 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
PCDH1Q08174 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PCDH1Q08174 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
PCDH1Q08174 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PCDH1Q08174 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PCDH1Q08174 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC17.63■□□□□ 0.41
PCDH1Q08174 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC17.63■□□□□ 0.41
PCDH1Q08174 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PCDH1Q08174 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PCDH1Q08174 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
PCDH1Q08174 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PCDH1Q08174 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC17.63■□□□□ 0.41
PCDH1Q08174 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PCDH1Q08174 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
PCDH1Q08174 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PCDH1Q08174 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC17.62■□□□□ 0.41
PCDH1Q08174 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.62■□□□□ 0.41
PCDH1Q08174 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PCDH1Q08174 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
PCDH1Q08174 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.62■□□□□ 0.41
PCDH1Q08174 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
PCDH1Q08174 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PCDH1Q08174 AC007613.1-201ENST00000572811 2597 ntBASIC17.62■□□□□ 0.41
PCDH1Q08174 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC17.62■□□□□ 0.41
PCDH1Q08174 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
PCDH1Q08174 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PCDH1Q08174 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PCDH1Q08174 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC17.62■□□□□ 0.41
PCDH1Q08174 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC17.62■□□□□ 0.41
PCDH1Q08174 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC17.62■□□□□ 0.41
PCDH1Q08174 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC17.62■□□□□ 0.41
PCDH1Q08174 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC17.62■□□□□ 0.41
PCDH1Q08174 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
PCDH1Q08174 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
PCDH1Q08174 AC073912.3-201ENST00000624414 853 ntBASIC17.62■□□□□ 0.41
PCDH1Q08174 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
PCDH1Q08174 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC17.62■□□□□ 0.41
PCDH1Q08174 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC17.62■□□□□ 0.41
PCDH1Q08174 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PCDH1Q08174 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PCDH1Q08174 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PCDH1Q08174 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PCDH1Q08174 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PCDH1Q08174 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PCDH1Q08174 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PCDH1Q08174 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PCDH1Q08174 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC17.62■□□□□ 0.41
PCDH1Q08174 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PCDH1Q08174 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC17.62■□□□□ 0.41
PCDH1Q08174 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PCDH1Q08174 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC17.62■□□□□ 0.41
PCDH1Q08174 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
PCDH1Q08174 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PCDH1Q08174 AC020916.1-201ENST00000587762 1774 ntBASIC17.61■□□□□ 0.41
PCDH1Q08174 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PCDH1Q08174 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PCDH1Q08174 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PCDH1Q08174 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.61■□□□□ 0.41
PCDH1Q08174 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PCDH1Q08174 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
PCDH1Q08174 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms