Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 HNRNPDP1-201ENST00000439535 754 ntBASIC15.71■□□□□ 0.11
ABCA4P78363 MINOS1P3-201ENST00000457048 203 ntBASIC15.71■□□□□ 0.11
ABCA4P78363 CFL1-212ENST00000531413 636 ntTSL 3 BASIC15.71■□□□□ 0.11
ABCA4P78363 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC15.71■□□□□ 0.11
ABCA4P78363 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
ABCA4P78363 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ABCA4P78363 RPL18-209ENST00000550645 463 ntTSL 5 BASIC15.71■□□□□ 0.11
ABCA4P78363 RPL18-214ENST00000552588 559 ntTSL 3 BASIC15.71■□□□□ 0.11
ABCA4P78363 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
ABCA4P78363 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC15.71■□□□□ 0.11
ABCA4P78363 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
ABCA4P78363 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ABCA4P78363 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC15.71■□□□□ 0.11
ABCA4P78363 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
ABCA4P78363 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
ABCA4P78363 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
ABCA4P78363 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
ABCA4P78363 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC15.7■□□□□ 0.1
ABCA4P78363 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
ABCA4P78363 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC15.7■□□□□ 0.1
ABCA4P78363 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
ABCA4P78363 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
ABCA4P78363 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC15.7■□□□□ 0.1
ABCA4P78363 AC073648.2-201ENST00000510116 352 ntBASIC15.7■□□□□ 0.1
ABCA4P78363 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC15.7■□□□□ 0.1
ABCA4P78363 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ABCA4P78363 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ABCA4P78363 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
ABCA4P78363 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
ABCA4P78363 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ABCA4P78363 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ABCA4P78363 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
ABCA4P78363 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
ABCA4P78363 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC15.7■□□□□ 0.1
ABCA4P78363 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
ABCA4P78363 AP005117.1-201ENST00000584346 1413 ntBASIC15.7■□□□□ 0.1
ABCA4P78363 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
ABCA4P78363 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
ABCA4P78363 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ABCA4P78363 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC15.7■□□□□ 0.1
ABCA4P78363 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
ABCA4P78363 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC15.7■□□□□ 0.1
ABCA4P78363 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC15.7■□□□□ 0.1
ABCA4P78363 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC15.7■□□□□ 0.1
ABCA4P78363 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
ABCA4P78363 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC15.7■□□□□ 0.1
ABCA4P78363 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC15.7■□□□□ 0.1
ABCA4P78363 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
ABCA4P78363 PIN1-206ENST00000587625 878 ntTSL 2 BASIC15.7■□□□□ 0.1
ABCA4P78363 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC15.7■□□□□ 0.1
ABCA4P78363 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC15.7■□□□□ 0.1
ABCA4P78363 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
ABCA4P78363 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC15.7■□□□□ 0.1
ABCA4P78363 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
ABCA4P78363 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ABCA4P78363 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC15.7■□□□□ 0.1
ABCA4P78363 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC15.7■□□□□ 0.1
ABCA4P78363 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ABCA4P78363 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
ABCA4P78363 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
ABCA4P78363 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ABCA4P78363 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ABCA4P78363 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ABCA4P78363 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
ABCA4P78363 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ABCA4P78363 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC15.69■□□□□ 0.1
ABCA4P78363 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC15.69■□□□□ 0.1
ABCA4P78363 NUS1P2-201ENST00000417358 873 ntBASIC15.69■□□□□ 0.1
ABCA4P78363 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC15.69■□□□□ 0.1
ABCA4P78363 RPL13AP23-201ENST00000480739 586 ntBASIC15.69■□□□□ 0.1
ABCA4P78363 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC15.69■□□□□ 0.1
ABCA4P78363 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ABCA4P78363 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC15.69■□□□□ 0.1
ABCA4P78363 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ABCA4P78363 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
ABCA4P78363 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
ABCA4P78363 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ABCA4P78363 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ABCA4P78363 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ABCA4P78363 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
ABCA4P78363 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ABCA4P78363 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ABCA4P78363 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ABCA4P78363 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
ABCA4P78363 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC15.69■□□□□ 0.1
ABCA4P78363 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC15.69■□□□□ 0.1
ABCA4P78363 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC15.69■□□□□ 0.1
ABCA4P78363 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
ABCA4P78363 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
ABCA4P78363 IGHV3-41-201ENST00000613121 348 ntBASIC15.69■□□□□ 0.1
ABCA4P78363 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC15.69■□□□□ 0.1
ABCA4P78363 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
ABCA4P78363 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
ABCA4P78363 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC15.69■□□□□ 0.1
ABCA4P78363 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC15.69■□□□□ 0.1
ABCA4P78363 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
ABCA4P78363 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
ABCA4P78363 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC15.68■□□□□ 0.1
ABCA4P78363 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
ABCA4P78363 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms