Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
RNF4P78317 LINC01126-201ENST00000623515 1646 ntBASIC16.9■□□□□ 0.3
RNF4P78317 Z83836.1-201ENST00000624605 1642 ntBASIC16.9■□□□□ 0.3
RNF4P78317 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RNF4P78317 BAALC-202ENST00000306391 243 ntTSL 5 BASIC16.9■□□□□ 0.3
RNF4P78317 BAALC-204ENST00000330955 222 ntTSL 5 BASIC16.9■□□□□ 0.3
RNF4P78317 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RNF4P78317 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RNF4P78317 HES2-202ENST00000377836 507 ntTSL 2 BASIC16.9■□□□□ 0.3
RNF4P78317 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
RNF4P78317 IGHGP-201ENST00000390555 1178 ntBASIC16.9■□□□□ 0.3
RNF4P78317 TSPY22P-201ENST00000427496 604 ntBASIC16.9■□□□□ 0.3
RNF4P78317 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC16.9■□□□□ 0.3
RNF4P78317 PPOX-214ENST00000535223 664 ntTSL 3 BASIC16.9■□□□□ 0.3
RNF4P78317 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
RNF4P78317 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
RNF4P78317 GPR32P1-201ENST00000601788 811 ntBASIC16.9■□□□□ 0.3
RNF4P78317 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RNF4P78317 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
RNF4P78317 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RNF4P78317 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RNF4P78317 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC16.9■□□□□ 0.3
RNF4P78317 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
RNF4P78317 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RNF4P78317 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC16.9■□□□□ 0.3
RNF4P78317 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RNF4P78317 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
RNF4P78317 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
RNF4P78317 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
RNF4P78317 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
RNF4P78317 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
RNF4P78317 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.3
RNF4P78317 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.3
RNF4P78317 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
RNF4P78317 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RNF4P78317 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RNF4P78317 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RNF4P78317 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RNF4P78317 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RNF4P78317 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RNF4P78317 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RNF4P78317 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RNF4P78317 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
RNF4P78317 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RNF4P78317 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC16.89■□□□□ 0.29
RNF4P78317 BX276092.5-203ENST00000456199 560 ntBASIC16.89■□□□□ 0.29
RNF4P78317 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
RNF4P78317 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC16.89■□□□□ 0.29
RNF4P78317 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
RNF4P78317 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
RNF4P78317 AC069148.1-201ENST00000608741 768 ntBASIC16.89■□□□□ 0.29
RNF4P78317 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
RNF4P78317 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC16.89■□□□□ 0.29
RNF4P78317 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC16.89■□□□□ 0.29
RNF4P78317 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC16.89■□□□□ 0.29
RNF4P78317 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RNF4P78317 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
RNF4P78317 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
RNF4P78317 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RNF4P78317 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC16.89■□□□□ 0.29
RNF4P78317 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC16.89■□□□□ 0.29
RNF4P78317 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
RNF4P78317 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RNF4P78317 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
RNF4P78317 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
RNF4P78317 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RNF4P78317 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RNF4P78317 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC16.88■□□□□ 0.29
RNF4P78317 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RNF4P78317 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RNF4P78317 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC16.88■□□□□ 0.29
RNF4P78317 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC16.88■□□□□ 0.29
RNF4P78317 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
RNF4P78317 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RNF4P78317 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
RNF4P78317 AC113404.2-201ENST00000507884 177 ntBASIC16.88■□□□□ 0.29
RNF4P78317 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
RNF4P78317 KRT8P26-201ENST00000534154 1276 ntBASIC16.88■□□□□ 0.29
RNF4P78317 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC16.88■□□□□ 0.29
RNF4P78317 AL390719.2-201ENST00000606993 987 ntBASIC16.88■□□□□ 0.29
RNF4P78317 AL121672.3-201ENST00000608644 468 ntBASIC16.88■□□□□ 0.29
RNF4P78317 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
RNF4P78317 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
RNF4P78317 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC16.88■□□□□ 0.29
RNF4P78317 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC16.88■□□□□ 0.29
RNF4P78317 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RNF4P78317 UBC-206ENST00000538617 1303 ntTSL 5 BASIC16.88■□□□□ 0.29
RNF4P78317 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
RNF4P78317 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
RNF4P78317 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RNF4P78317 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC16.88■□□□□ 0.29
RNF4P78317 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC16.88■□□□□ 0.29
RNF4P78317 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
RNF4P78317 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
RNF4P78317 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
RNF4P78317 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RNF4P78317 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
RNF4P78317 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC16.87■□□□□ 0.29
RNF4P78317 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
RNF4P78317 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms