Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC15.93■□□□□ 0.14
COL8A1P27658 RAB17-203ENST00000409576 466 ntTSL 3 BASIC15.93■□□□□ 0.14
COL8A1P27658 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC15.93■□□□□ 0.14
COL8A1P27658 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC15.93■□□□□ 0.14
COL8A1P27658 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC15.93■□□□□ 0.14
COL8A1P27658 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC15.93■□□□□ 0.14
COL8A1P27658 REEP1-209ENST00000541910 969 ntTSL 2 BASIC15.93■□□□□ 0.14
COL8A1P27658 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
COL8A1P27658 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC15.93■□□□□ 0.14
COL8A1P27658 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC15.93■□□□□ 0.14
COL8A1P27658 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC15.93■□□□□ 0.14
COL8A1P27658 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC15.93■□□□□ 0.14
COL8A1P27658 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC15.93■□□□□ 0.14
COL8A1P27658 ORC5-208ENST00000626700 344 ntTSL 3 BASIC15.93■□□□□ 0.14
COL8A1P27658 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC15.93■□□□□ 0.14
COL8A1P27658 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL8A1P27658 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL8A1P27658 ADM-207ENST00000530439 1839 ntTSL 2 BASIC15.93■□□□□ 0.14
COL8A1P27658 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
COL8A1P27658 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL8A1P27658 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL8A1P27658 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
COL8A1P27658 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC15.93■□□□□ 0.14
COL8A1P27658 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC15.93■□□□□ 0.14
COL8A1P27658 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL8A1P27658 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
COL8A1P27658 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC15.92■□□□□ 0.14
COL8A1P27658 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC15.92■□□□□ 0.14
COL8A1P27658 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
COL8A1P27658 AC007952.6-201ENST00000573168 2673 ntBASIC15.92■□□□□ 0.14
COL8A1P27658 AC003957.1-201ENST00000625108 2673 ntBASIC15.92■□□□□ 0.14
COL8A1P27658 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL8A1P27658 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL8A1P27658 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
COL8A1P27658 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
COL8A1P27658 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL8A1P27658 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL8A1P27658 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
COL8A1P27658 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL8A1P27658 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL8A1P27658 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC15.92■□□□□ 0.14
COL8A1P27658 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC15.92■□□□□ 0.14
COL8A1P27658 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC15.92■□□□□ 0.14
COL8A1P27658 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC15.92■□□□□ 0.14
COL8A1P27658 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC15.92■□□□□ 0.14
COL8A1P27658 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC15.92■□□□□ 0.14
COL8A1P27658 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC15.92■□□□□ 0.14
COL8A1P27658 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC15.92■□□□□ 0.14
COL8A1P27658 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
COL8A1P27658 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
COL8A1P27658 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
COL8A1P27658 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
COL8A1P27658 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC15.92■□□□□ 0.14
COL8A1P27658 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL8A1P27658 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC15.92■□□□□ 0.14
COL8A1P27658 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL8A1P27658 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL8A1P27658 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
COL8A1P27658 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL8A1P27658 AP005117.1-201ENST00000584346 1413 ntBASIC15.92■□□□□ 0.14
COL8A1P27658 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL8A1P27658 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
COL8A1P27658 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
COL8A1P27658 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
COL8A1P27658 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
COL8A1P27658 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL8A1P27658 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC15.91■□□□□ 0.14
COL8A1P27658 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC15.91■□□□□ 0.14
COL8A1P27658 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
COL8A1P27658 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL8A1P27658 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL8A1P27658 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL8A1P27658 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC15.91■□□□□ 0.14
COL8A1P27658 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL8A1P27658 RNF165-205ENST00000588679 2904 ntBASIC15.91■□□□□ 0.14
COL8A1P27658 BEX3-201ENST00000361298 921 ntTSL 2 BASIC15.91■□□□□ 0.14
COL8A1P27658 FUOM-202ENST00000368551 628 ntTSL 3 BASIC15.91■□□□□ 0.14
COL8A1P27658 PAWRP1-201ENST00000451083 565 ntBASIC15.91■□□□□ 0.14
COL8A1P27658 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC15.91■□□□□ 0.14
COL8A1P27658 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL8A1P27658 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC15.91■□□□□ 0.14
COL8A1P27658 AC005829.1-201ENST00000570002 483 ntBASIC15.91■□□□□ 0.14
COL8A1P27658 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC15.91■□□□□ 0.14
COL8A1P27658 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC15.91■□□□□ 0.14
COL8A1P27658 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL8A1P27658 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC15.91■□□□□ 0.14
COL8A1P27658 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL8A1P27658 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
COL8A1P27658 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC15.91■□□□□ 0.14
COL8A1P27658 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL8A1P27658 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL8A1P27658 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC15.91■□□□□ 0.14
COL8A1P27658 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL8A1P27658 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL8A1P27658 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
COL8A1P27658 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL8A1P27658 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL8A1P27658 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC15.9■□□□□ 0.14
COL8A1P27658 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC15.9■□□□□ 0.14
COL8A1P27658 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms