Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
COL5A3P25940 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
COL5A3P25940 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC22.96■■□□□ 1.27
COL5A3P25940 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC22.96■■□□□ 1.27
COL5A3P25940 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
COL5A3P25940 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC22.95■■□□□ 1.27
COL5A3P25940 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC22.95■■□□□ 1.27
COL5A3P25940 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC22.95■■□□□ 1.27
COL5A3P25940 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
COL5A3P25940 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
COL5A3P25940 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
COL5A3P25940 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC22.95■■□□□ 1.26
COL5A3P25940 EFS-203ENST00000429593 2610 ntTSL 2 BASIC22.95■■□□□ 1.26
COL5A3P25940 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
COL5A3P25940 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
COL5A3P25940 AP006288.1-201ENST00000446065 395 ntBASIC22.95■■□□□ 1.26
COL5A3P25940 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC22.95■■□□□ 1.26
COL5A3P25940 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
COL5A3P25940 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC22.95■■□□□ 1.26
COL5A3P25940 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC22.95■■□□□ 1.26
COL5A3P25940 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC22.95■■□□□ 1.26
COL5A3P25940 COBL-210ENST00000632460 1941 ntTSL 5 BASIC22.95■■□□□ 1.26
COL5A3P25940 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
COL5A3P25940 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC22.94■■□□□ 1.26
COL5A3P25940 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC22.94■■□□□ 1.26
COL5A3P25940 AC132938.6-201ENST00000623828 1655 ntBASIC22.94■■□□□ 1.26
COL5A3P25940 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
COL5A3P25940 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC22.94■■□□□ 1.26
COL5A3P25940 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC22.94■■□□□ 1.26
COL5A3P25940 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC22.94■■□□□ 1.26
COL5A3P25940 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC22.94■■□□□ 1.26
COL5A3P25940 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC22.94■■□□□ 1.26
COL5A3P25940 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC22.94■■□□□ 1.26
COL5A3P25940 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC22.94■■□□□ 1.26
COL5A3P25940 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC22.94■■□□□ 1.26
COL5A3P25940 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
COL5A3P25940 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC22.94■■□□□ 1.26
COL5A3P25940 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC22.94■■□□□ 1.26
COL5A3P25940 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
COL5A3P25940 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
COL5A3P25940 SNCG-201ENST00000348795 684 ntTSL 2 BASIC22.94■■□□□ 1.26
COL5A3P25940 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC22.94■■□□□ 1.26
COL5A3P25940 AC027796.2-201ENST00000575326 344 ntBASIC22.94■■□□□ 1.26
COL5A3P25940 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC22.94■■□□□ 1.26
COL5A3P25940 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
COL5A3P25940 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC22.93■■□□□ 1.26
COL5A3P25940 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
COL5A3P25940 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC22.93■■□□□ 1.26
COL5A3P25940 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC22.93■■□□□ 1.26
COL5A3P25940 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
COL5A3P25940 PMPCAP1-201ENST00000508114 1576 ntBASIC22.93■■□□□ 1.26
COL5A3P25940 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC22.93■■□□□ 1.26
COL5A3P25940 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC22.93■■□□□ 1.26
COL5A3P25940 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC22.93■■□□□ 1.26
COL5A3P25940 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC22.93■■□□□ 1.26
COL5A3P25940 AC108751.1-201ENST00000490852 363 ntBASIC22.93■■□□□ 1.26
COL5A3P25940 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC22.93■■□□□ 1.26
COL5A3P25940 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC22.93■■□□□ 1.26
COL5A3P25940 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC22.93■■□□□ 1.26
COL5A3P25940 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
COL5A3P25940 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
COL5A3P25940 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC22.92■■□□□ 1.26
COL5A3P25940 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC22.92■■□□□ 1.26
COL5A3P25940 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
COL5A3P25940 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
COL5A3P25940 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC22.92■■□□□ 1.26
COL5A3P25940 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC22.92■■□□□ 1.26
COL5A3P25940 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC22.92■■□□□ 1.26
COL5A3P25940 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC22.92■■□□□ 1.26
COL5A3P25940 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC22.92■■□□□ 1.26
COL5A3P25940 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC22.92■■□□□ 1.26
COL5A3P25940 AC134684.3-201ENST00000641758 218 ntBASIC22.92■■□□□ 1.26
COL5A3P25940 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC22.92■■□□□ 1.26
COL5A3P25940 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC22.92■■□□□ 1.26
COL5A3P25940 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC22.91■■□□□ 1.26
COL5A3P25940 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC22.91■■□□□ 1.26
COL5A3P25940 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
COL5A3P25940 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
COL5A3P25940 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC22.91■■□□□ 1.26
COL5A3P25940 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
COL5A3P25940 SOD2-201ENST00000337404 991 ntTSL 2 BASIC22.91■■□□□ 1.26
COL5A3P25940 BEX3-201ENST00000361298 921 ntTSL 2 BASIC22.91■■□□□ 1.26
COL5A3P25940 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC22.91■■□□□ 1.26
COL5A3P25940 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC22.91■■□□□ 1.26
COL5A3P25940 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC22.91■■□□□ 1.26
COL5A3P25940 HNRNPA1P28-201ENST00000424481 961 ntBASIC22.91■■□□□ 1.26
COL5A3P25940 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC22.91■■□□□ 1.26
COL5A3P25940 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
COL5A3P25940 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC22.91■■□□□ 1.26
COL5A3P25940 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC22.91■■□□□ 1.26
COL5A3P25940 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
COL5A3P25940 USP48-205ENST00000421625 2818 ntTSL 2 BASIC22.91■■□□□ 1.26
COL5A3P25940 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
COL5A3P25940 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC22.91■■□□□ 1.26
COL5A3P25940 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC22.91■■□□□ 1.26
COL5A3P25940 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
COL5A3P25940 COA5-202ENST00000409997 557 ntTSL 4 BASIC22.91■■□□□ 1.26
COL5A3P25940 ELK2BP-201ENST00000415014 1224 ntBASIC22.91■■□□□ 1.26
COL5A3P25940 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC22.91■■□□□ 1.26
COL5A3P25940 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC22.91■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms