Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC19.24■□□□□ 0.67
BDNFP23560 DRAXINP1-201ENST00000437611 948 ntBASIC19.24■□□□□ 0.67
BDNFP23560 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
BDNFP23560 AC113404.2-201ENST00000507884 177 ntBASIC19.24■□□□□ 0.67
BDNFP23560 GUSBP12-201ENST00000513727 720 ntBASIC19.24■□□□□ 0.67
BDNFP23560 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC19.24■□□□□ 0.67
BDNFP23560 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
BDNFP23560 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
BDNFP23560 AC124864.1-201ENST00000623408 392 ntBASIC19.24■□□□□ 0.67
BDNFP23560 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
BDNFP23560 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC19.24■□□□□ 0.67
BDNFP23560 AC004408.2-201ENST00000623613 2777 ntBASIC19.24■□□□□ 0.67
BDNFP23560 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
BDNFP23560 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
BDNFP23560 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
BDNFP23560 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
BDNFP23560 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC19.24■□□□□ 0.67
BDNFP23560 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
BDNFP23560 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
BDNFP23560 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
BDNFP23560 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
BDNFP23560 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
BDNFP23560 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
BDNFP23560 PPIH-202ENST00000372549 327 ntTSL 3 BASIC19.23■□□□□ 0.67
BDNFP23560 LINC00265-3P-201ENST00000447588 903 ntBASIC19.23■□□□□ 0.67
BDNFP23560 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
BDNFP23560 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
BDNFP23560 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
BDNFP23560 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC19.23■□□□□ 0.67
BDNFP23560 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
BDNFP23560 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
BDNFP23560 AL592071.1-201ENST00000611956 408 ntBASIC19.23■□□□□ 0.67
BDNFP23560 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC19.23■□□□□ 0.67
BDNFP23560 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
BDNFP23560 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
BDNFP23560 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
BDNFP23560 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC19.23■□□□□ 0.67
BDNFP23560 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
BDNFP23560 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
BDNFP23560 GMCL1P1-201ENST00000463439 1581 ntBASIC19.23■□□□□ 0.67
BDNFP23560 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
BDNFP23560 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
BDNFP23560 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
BDNFP23560 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
BDNFP23560 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
BDNFP23560 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
BDNFP23560 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC19.22■□□□□ 0.67
BDNFP23560 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC19.22■□□□□ 0.67
BDNFP23560 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC19.22■□□□□ 0.67
BDNFP23560 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
BDNFP23560 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC19.22■□□□□ 0.67
BDNFP23560 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC19.22■□□□□ 0.67
BDNFP23560 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
BDNFP23560 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
BDNFP23560 DUSP5P1-201ENST00000441325 1139 ntBASIC19.22■□□□□ 0.67
BDNFP23560 TOB2P1-201ENST00000469761 992 ntBASIC19.22■□□□□ 0.67
BDNFP23560 RN7SL606P-201ENST00000472779 293 ntBASIC19.22■□□□□ 0.67
BDNFP23560 CIB2-208ENST00000560618 804 ntTSL 2 BASIC19.22■□□□□ 0.67
BDNFP23560 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
BDNFP23560 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC19.22■□□□□ 0.67
BDNFP23560 MIR3652-201ENST00000579335 131 ntBASIC19.22■□□□□ 0.67
BDNFP23560 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
BDNFP23560 AC073592.3-201ENST00000625118 1834 ntBASIC19.22■□□□□ 0.67
BDNFP23560 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
BDNFP23560 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC19.22■□□□□ 0.67
BDNFP23560 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
BDNFP23560 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
BDNFP23560 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
BDNFP23560 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC19.22■□□□□ 0.67
BDNFP23560 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC19.22■□□□□ 0.67
BDNFP23560 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC19.22■□□□□ 0.67
BDNFP23560 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
BDNFP23560 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
BDNFP23560 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
BDNFP23560 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
BDNFP23560 ESPNP-201ENST00000270691 2015 ntBASIC19.21■□□□□ 0.67
BDNFP23560 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
BDNFP23560 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
BDNFP23560 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
BDNFP23560 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
BDNFP23560 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
BDNFP23560 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC19.21■□□□□ 0.67
BDNFP23560 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC19.21■□□□□ 0.67
BDNFP23560 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
BDNFP23560 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC19.21■□□□□ 0.67
BDNFP23560 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC19.21■□□□□ 0.67
BDNFP23560 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC19.21■□□□□ 0.67
BDNFP23560 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
BDNFP23560 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC19.21■□□□□ 0.67
BDNFP23560 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
BDNFP23560 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
BDNFP23560 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
BDNFP23560 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC19.21■□□□□ 0.67
BDNFP23560 AP000867.3-201ENST00000524675 377 ntBASIC19.21■□□□□ 0.67
BDNFP23560 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC19.21■□□□□ 0.67
BDNFP23560 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC19.21■□□□□ 0.67
BDNFP23560 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC19.21■□□□□ 0.67
BDNFP23560 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC19.21■□□□□ 0.67
BDNFP23560 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC19.21■□□□□ 0.67
BDNFP23560 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms