Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
COL2A1P02458 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
COL2A1P02458 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL2A1P02458 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL2A1P02458 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
COL2A1P02458 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC21.26■□□□□ 0.99
COL2A1P02458 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC21.26■□□□□ 0.99
COL2A1P02458 ABBA01031661.1-201ENST00000634362 1253 ntBASIC21.26■□□□□ 0.99
COL2A1P02458 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
COL2A1P02458 ESPNP-201ENST00000270691 2015 ntBASIC21.26■□□□□ 0.99
COL2A1P02458 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC21.26■□□□□ 0.99
COL2A1P02458 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL2A1P02458 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL2A1P02458 AC097374.2-201ENST00000618617 1306 ntBASIC21.26■□□□□ 0.99
COL2A1P02458 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL2A1P02458 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
COL2A1P02458 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
COL2A1P02458 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC21.26■□□□□ 0.99
COL2A1P02458 AC005082.1-201ENST00000413042 2259 ntBASIC21.26■□□□□ 0.99
COL2A1P02458 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
COL2A1P02458 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL2A1P02458 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC21.26■□□□□ 0.99
COL2A1P02458 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL2A1P02458 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL2A1P02458 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL2A1P02458 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC21.26■□□□□ 0.99
COL2A1P02458 AC096633.1-201ENST00000422446 749 ntBASIC21.26■□□□□ 0.99
COL2A1P02458 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC21.26■□□□□ 0.99
COL2A1P02458 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC21.26■□□□□ 0.99
COL2A1P02458 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC21.26■□□□□ 0.99
COL2A1P02458 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC21.26■□□□□ 0.99
COL2A1P02458 SART3-203ENST00000546611 1184 ntBASIC21.26■□□□□ 0.99
COL2A1P02458 AC139887.3-201ENST00000568585 713 ntBASIC21.26■□□□□ 0.99
COL2A1P02458 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC21.26■□□□□ 0.99
COL2A1P02458 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC21.26■□□□□ 0.99
COL2A1P02458 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC21.26■□□□□ 0.99
COL2A1P02458 FAM215A-202ENST00000632077 792 ntBASIC21.26■□□□□ 0.99
COL2A1P02458 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL2A1P02458 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL2A1P02458 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL2A1P02458 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC21.25■□□□□ 0.99
COL2A1P02458 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL2A1P02458 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
COL2A1P02458 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL2A1P02458 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC21.25■□□□□ 0.99
COL2A1P02458 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC21.25■□□□□ 0.99
COL2A1P02458 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL2A1P02458 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL2A1P02458 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL2A1P02458 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL2A1P02458 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL2A1P02458 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
COL2A1P02458 AC007967.3-201ENST00000434308 558 ntBASIC21.25■□□□□ 0.99
COL2A1P02458 HNRNPDP1-201ENST00000439535 754 ntBASIC21.25■□□□□ 0.99
COL2A1P02458 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
COL2A1P02458 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
COL2A1P02458 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL2A1P02458 RNPS1P1-201ENST00000507437 918 ntBASIC21.25■□□□□ 0.99
COL2A1P02458 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC21.25■□□□□ 0.99
COL2A1P02458 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC21.25■□□□□ 0.99
COL2A1P02458 LITAF-211ENST00000572255 516 ntTSL 4 BASIC21.25■□□□□ 0.99
COL2A1P02458 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC21.25■□□□□ 0.99
COL2A1P02458 AL049840.3-201ENST00000602669 611 ntBASIC21.25■□□□□ 0.99
COL2A1P02458 PRKN-208ENST00000610470 531 ntTSL 2 BASIC21.25■□□□□ 0.99
COL2A1P02458 PRKN-209ENST00000612485 225 ntTSL 5 BASIC21.25■□□□□ 0.99
COL2A1P02458 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
COL2A1P02458 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL2A1P02458 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL2A1P02458 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL2A1P02458 AC073592.3-201ENST00000625118 1834 ntBASIC21.25■□□□□ 0.99
COL2A1P02458 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL2A1P02458 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL2A1P02458 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL2A1P02458 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
COL2A1P02458 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL2A1P02458 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL2A1P02458 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC21.24■□□□□ 0.99
COL2A1P02458 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL2A1P02458 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
COL2A1P02458 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL2A1P02458 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
COL2A1P02458 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC21.24■□□□□ 0.99
COL2A1P02458 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
COL2A1P02458 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
COL2A1P02458 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL2A1P02458 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC21.24■□□□□ 0.99
COL2A1P02458 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC21.24■□□□□ 0.99
COL2A1P02458 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL2A1P02458 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL2A1P02458 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
COL2A1P02458 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
COL2A1P02458 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC21.24■□□□□ 0.99
COL2A1P02458 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC21.24■□□□□ 0.99
COL2A1P02458 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
COL2A1P02458 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL2A1P02458 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
COL2A1P02458 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC21.24■□□□□ 0.99
COL2A1P02458 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
COL2A1P02458 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC21.23■□□□□ 0.99
COL2A1P02458 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms