Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 AL732292.2-201ENST00000609649 430 ntBASIC21.16■□□□□ 0.98
CTDP1Q9Y5B0 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
CTDP1Q9Y5B0 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
CTDP1Q9Y5B0 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CTDP1Q9Y5B0 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CTDP1Q9Y5B0 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
CTDP1Q9Y5B0 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CTDP1Q9Y5B0 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
CTDP1Q9Y5B0 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC21.16■□□□□ 0.98
CTDP1Q9Y5B0 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CTDP1Q9Y5B0 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CTDP1Q9Y5B0 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CTDP1Q9Y5B0 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CTDP1Q9Y5B0 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CTDP1Q9Y5B0 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
CTDP1Q9Y5B0 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CTDP1Q9Y5B0 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
CTDP1Q9Y5B0 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CTDP1Q9Y5B0 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CTDP1Q9Y5B0 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
CTDP1Q9Y5B0 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC21.15■□□□□ 0.98
CTDP1Q9Y5B0 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC21.15■□□□□ 0.98
CTDP1Q9Y5B0 FAAHP1-202ENST00000446499 1238 ntBASIC21.15■□□□□ 0.98
CTDP1Q9Y5B0 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC21.15■□□□□ 0.98
CTDP1Q9Y5B0 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CTDP1Q9Y5B0 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC21.15■□□□□ 0.98
CTDP1Q9Y5B0 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC21.15■□□□□ 0.98
CTDP1Q9Y5B0 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CTDP1Q9Y5B0 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
CTDP1Q9Y5B0 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CTDP1Q9Y5B0 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC21.15■□□□□ 0.98
CTDP1Q9Y5B0 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
CTDP1Q9Y5B0 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CTDP1Q9Y5B0 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CTDP1Q9Y5B0 AC116562.4-201ENST00000641316 2276 ntBASIC21.15■□□□□ 0.98
CTDP1Q9Y5B0 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CTDP1Q9Y5B0 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
CTDP1Q9Y5B0 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
CTDP1Q9Y5B0 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CTDP1Q9Y5B0 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CTDP1Q9Y5B0 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CTDP1Q9Y5B0 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
CTDP1Q9Y5B0 TSPY19P-201ENST00000418461 509 ntBASIC21.14■□□□□ 0.97
CTDP1Q9Y5B0 TSPY18P-201ENST00000441642 509 ntBASIC21.14■□□□□ 0.97
CTDP1Q9Y5B0 KRT17P6-201ENST00000453795 1220 ntBASIC21.14■□□□□ 0.97
CTDP1Q9Y5B0 UNC93B7-201ENST00000509439 705 ntBASIC21.14■□□□□ 0.97
CTDP1Q9Y5B0 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC21.14■□□□□ 0.97
CTDP1Q9Y5B0 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC21.14■□□□□ 0.97
CTDP1Q9Y5B0 AC004263.2-201ENST00000617183 678 ntBASIC21.14■□□□□ 0.97
CTDP1Q9Y5B0 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CTDP1Q9Y5B0 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC21.14■□□□□ 0.97
CTDP1Q9Y5B0 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CTDP1Q9Y5B0 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
CTDP1Q9Y5B0 PTGES2-AS1-201ENST00000443493 2100 ntBASIC21.14■□□□□ 0.97
CTDP1Q9Y5B0 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CTDP1Q9Y5B0 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CTDP1Q9Y5B0 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CTDP1Q9Y5B0 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC21.13■□□□□ 0.97
CTDP1Q9Y5B0 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
CTDP1Q9Y5B0 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CTDP1Q9Y5B0 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CTDP1Q9Y5B0 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CTDP1Q9Y5B0 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC21.13■□□□□ 0.97
CTDP1Q9Y5B0 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC21.13■□□□□ 0.97
CTDP1Q9Y5B0 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CTDP1Q9Y5B0 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CTDP1Q9Y5B0 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CTDP1Q9Y5B0 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CTDP1Q9Y5B0 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC21.13■□□□□ 0.97
CTDP1Q9Y5B0 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CTDP1Q9Y5B0 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC21.13■□□□□ 0.97
CTDP1Q9Y5B0 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC21.13■□□□□ 0.97
CTDP1Q9Y5B0 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC21.13■□□□□ 0.97
CTDP1Q9Y5B0 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
CTDP1Q9Y5B0 MYLKP1-201ENST00000509077 1580 ntBASIC21.13■□□□□ 0.97
CTDP1Q9Y5B0 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CTDP1Q9Y5B0 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CTDP1Q9Y5B0 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CTDP1Q9Y5B0 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC21.13■□□□□ 0.97
CTDP1Q9Y5B0 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC21.13■□□□□ 0.97
CTDP1Q9Y5B0 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
CTDP1Q9Y5B0 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
CTDP1Q9Y5B0 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CTDP1Q9Y5B0 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CTDP1Q9Y5B0 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CTDP1Q9Y5B0 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CTDP1Q9Y5B0 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC21.12■□□□□ 0.97
CTDP1Q9Y5B0 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
CTDP1Q9Y5B0 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
CTDP1Q9Y5B0 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC21.12■□□□□ 0.97
CTDP1Q9Y5B0 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
CTDP1Q9Y5B0 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
CTDP1Q9Y5B0 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CTDP1Q9Y5B0 HES2-202ENST00000377836 507 ntTSL 2 BASIC21.12■□□□□ 0.97
CTDP1Q9Y5B0 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
CTDP1Q9Y5B0 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CTDP1Q9Y5B0 MINOS1P3-201ENST00000457048 203 ntBASIC21.12■□□□□ 0.97
CTDP1Q9Y5B0 KRT18P31-201ENST00000506277 1292 ntBASIC21.12■□□□□ 0.97
CTDP1Q9Y5B0 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CTDP1Q9Y5B0 ABR-204ENST00000543210 1049 ntTSL 2 BASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms