Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
FOXA2Q9Y261 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
FOXA2Q9Y261 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
FOXA2Q9Y261 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
FOXA2Q9Y261 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
FOXA2Q9Y261 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
FOXA2Q9Y261 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
FOXA2Q9Y261 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.03
FOXA2Q9Y261 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
FOXA2Q9Y261 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
FOXA2Q9Y261 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
FOXA2Q9Y261 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC14.83□□□□□ -0.04
FOXA2Q9Y261 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
FOXA2Q9Y261 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
FOXA2Q9Y261 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
FOXA2Q9Y261 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC14.83□□□□□ -0.04
FOXA2Q9Y261 AC087499.1-201ENST00000418141 1075 ntBASIC14.83□□□□□ -0.04
FOXA2Q9Y261 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
FOXA2Q9Y261 TSPY17P-201ENST00000450329 467 ntBASIC14.83□□□□□ -0.04
FOXA2Q9Y261 AC128688.1-201ENST00000487626 519 ntBASIC14.83□□□□□ -0.04
FOXA2Q9Y261 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC14.83□□□□□ -0.04
FOXA2Q9Y261 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC14.83□□□□□ -0.04
FOXA2Q9Y261 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
FOXA2Q9Y261 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC14.83□□□□□ -0.04
FOXA2Q9Y261 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
FOXA2Q9Y261 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
FOXA2Q9Y261 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC14.83□□□□□ -0.04
FOXA2Q9Y261 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC14.83□□□□□ -0.04
FOXA2Q9Y261 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC14.83□□□□□ -0.04
FOXA2Q9Y261 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC14.83□□□□□ -0.04
FOXA2Q9Y261 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC14.83□□□□□ -0.04
FOXA2Q9Y261 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
FOXA2Q9Y261 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
FOXA2Q9Y261 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
FOXA2Q9Y261 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC14.83□□□□□ -0.04
FOXA2Q9Y261 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
FOXA2Q9Y261 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
FOXA2Q9Y261 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
FOXA2Q9Y261 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
FOXA2Q9Y261 KRT8P9-201ENST00000558927 1449 ntBASIC14.83□□□□□ -0.04
FOXA2Q9Y261 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
FOXA2Q9Y261 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA2Q9Y261 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
FOXA2Q9Y261 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC14.82□□□□□ -0.04
FOXA2Q9Y261 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA2Q9Y261 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA2Q9Y261 FLJ13224-201ENST00000313737 1514 ntBASIC14.82□□□□□ -0.04
FOXA2Q9Y261 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA2Q9Y261 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC14.82□□□□□ -0.04
FOXA2Q9Y261 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA2Q9Y261 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA2Q9Y261 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA2Q9Y261 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA2Q9Y261 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA2Q9Y261 TSPY14P-201ENST00000303979 915 ntBASIC14.82□□□□□ -0.04
FOXA2Q9Y261 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA2Q9Y261 PRR31-201ENST00000371629 978 ntTSL 2 BASIC14.82□□□□□ -0.04
FOXA2Q9Y261 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC14.82□□□□□ -0.04
FOXA2Q9Y261 MCCD1P1-208ENST00000445732 328 ntBASIC14.82□□□□□ -0.04
FOXA2Q9Y261 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC14.82□□□□□ -0.04
FOXA2Q9Y261 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC14.82□□□□□ -0.04
FOXA2Q9Y261 AC008622.2-201ENST00000617006 1229 ntBASIC14.82□□□□□ -0.04
FOXA2Q9Y261 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA2Q9Y261 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA2Q9Y261 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
FOXA2Q9Y261 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
FOXA2Q9Y261 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA2Q9Y261 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA2Q9Y261 PXK-206ENST00000463280 2825 ntTSL 2 BASIC14.82□□□□□ -0.04
FOXA2Q9Y261 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC14.82□□□□□ -0.04
FOXA2Q9Y261 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA2Q9Y261 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA2Q9Y261 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC14.82□□□□□ -0.04
FOXA2Q9Y261 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC14.82□□□□□ -0.04
FOXA2Q9Y261 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA2Q9Y261 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA2Q9Y261 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA2Q9Y261 REXO1L9P-201ENST00000604264 2108 ntBASIC14.81□□□□□ -0.04
FOXA2Q9Y261 AC034236.2-201ENST00000606662 1610 ntBASIC14.81□□□□□ -0.04
FOXA2Q9Y261 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC14.81□□□□□ -0.04
FOXA2Q9Y261 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
FOXA2Q9Y261 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
FOXA2Q9Y261 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA2Q9Y261 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC14.81□□□□□ -0.04
FOXA2Q9Y261 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA2Q9Y261 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC14.81□□□□□ -0.04
FOXA2Q9Y261 BUB3-202ENST00000368859 667 ntTSL 3 BASIC14.81□□□□□ -0.04
FOXA2Q9Y261 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA2Q9Y261 AL023284.2-201ENST00000405850 579 ntBASIC14.81□□□□□ -0.04
FOXA2Q9Y261 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC14.81□□□□□ -0.04
FOXA2Q9Y261 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC14.81□□□□□ -0.04
FOXA2Q9Y261 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC14.81□□□□□ -0.04
FOXA2Q9Y261 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA2Q9Y261 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA2Q9Y261 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC14.81□□□□□ -0.04
FOXA2Q9Y261 RPS20-210ENST00000523936 899 ntTSL 2 BASIC14.81□□□□□ -0.04
FOXA2Q9Y261 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA2Q9Y261 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
FOXA2Q9Y261 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA2Q9Y261 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms