Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC18.84■□□□□ 0.61
VPS28Q9UK41 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC18.84■□□□□ 0.61
VPS28Q9UK41 AL645929.1-201ENST00000420084 975 ntBASIC18.84■□□□□ 0.61
VPS28Q9UK41 PVRIG2P-201ENST00000435460 978 ntBASIC18.84■□□□□ 0.61
VPS28Q9UK41 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VPS28Q9UK41 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC18.84■□□□□ 0.61
VPS28Q9UK41 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VPS28Q9UK41 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC18.84■□□□□ 0.61
VPS28Q9UK41 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC18.84■□□□□ 0.61
VPS28Q9UK41 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC18.84■□□□□ 0.61
VPS28Q9UK41 SPEG-225ENST00000617028 815 ntTSL 5 BASIC18.84■□□□□ 0.61
VPS28Q9UK41 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS28Q9UK41 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS28Q9UK41 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.84■□□□□ 0.61
VPS28Q9UK41 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VPS28Q9UK41 AC007613.1-201ENST00000572811 2597 ntBASIC18.84■□□□□ 0.61
VPS28Q9UK41 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
VPS28Q9UK41 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
VPS28Q9UK41 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC18.83■□□□□ 0.61
VPS28Q9UK41 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.61
VPS28Q9UK41 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
VPS28Q9UK41 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS28Q9UK41 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC18.83■□□□□ 0.6
VPS28Q9UK41 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
VPS28Q9UK41 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS28Q9UK41 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC18.83■□□□□ 0.6
VPS28Q9UK41 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC18.83■□□□□ 0.6
VPS28Q9UK41 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC18.83■□□□□ 0.6
VPS28Q9UK41 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS28Q9UK41 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC18.83■□□□□ 0.6
VPS28Q9UK41 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
VPS28Q9UK41 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS28Q9UK41 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS28Q9UK41 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS28Q9UK41 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS28Q9UK41 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
VPS28Q9UK41 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC18.83■□□□□ 0.6
VPS28Q9UK41 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS28Q9UK41 BCL2-203ENST00000589955 5011 ntBASIC18.82■□□□□ 0.6
VPS28Q9UK41 AC135050.7-201ENST00000624508 2218 ntBASIC18.82■□□□□ 0.6
VPS28Q9UK41 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC18.82■□□□□ 0.6
VPS28Q9UK41 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS28Q9UK41 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.82■□□□□ 0.6
VPS28Q9UK41 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS28Q9UK41 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS28Q9UK41 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC18.82■□□□□ 0.6
VPS28Q9UK41 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS28Q9UK41 MIR149-201ENST00000384879 89 ntBASIC18.82■□□□□ 0.6
VPS28Q9UK41 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC18.82■□□□□ 0.6
VPS28Q9UK41 UPK3BP1-201ENST00000428678 509 ntBASIC18.82■□□□□ 0.6
VPS28Q9UK41 PTK2-216ENST00000519881 863 ntTSL 3 BASIC18.82■□□□□ 0.6
VPS28Q9UK41 REEP1-209ENST00000541910 969 ntTSL 2 BASIC18.82■□□□□ 0.6
VPS28Q9UK41 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC18.82■□□□□ 0.6
VPS28Q9UK41 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC18.82■□□□□ 0.6
VPS28Q9UK41 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC18.82■□□□□ 0.6
VPS28Q9UK41 AC116407.4-201ENST00000623319 1061 ntBASIC18.82■□□□□ 0.6
VPS28Q9UK41 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC18.82■□□□□ 0.6
VPS28Q9UK41 AL031598.1-201ENST00000561511 1773 ntBASIC18.82■□□□□ 0.6
VPS28Q9UK41 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
VPS28Q9UK41 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC18.82■□□□□ 0.6
VPS28Q9UK41 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS28Q9UK41 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS28Q9UK41 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC18.82■□□□□ 0.6
VPS28Q9UK41 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS28Q9UK41 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS28Q9UK41 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS28Q9UK41 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS28Q9UK41 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS28Q9UK41 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS28Q9UK41 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS28Q9UK41 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS28Q9UK41 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS28Q9UK41 FXN-203ENST00000396366 922 ntTSL 2 BASIC18.81■□□□□ 0.6
VPS28Q9UK41 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC18.81■□□□□ 0.6
VPS28Q9UK41 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS28Q9UK41 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC18.81■□□□□ 0.6
VPS28Q9UK41 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
VPS28Q9UK41 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC18.81■□□□□ 0.6
VPS28Q9UK41 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
VPS28Q9UK41 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS28Q9UK41 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS28Q9UK41 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS28Q9UK41 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC18.81■□□□□ 0.6
VPS28Q9UK41 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
VPS28Q9UK41 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS28Q9UK41 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS28Q9UK41 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS28Q9UK41 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC18.81■□□□□ 0.6
VPS28Q9UK41 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC18.81■□□□□ 0.6
VPS28Q9UK41 AC009113.1-201ENST00000570267 2443 ntBASIC18.81■□□□□ 0.6
VPS28Q9UK41 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
VPS28Q9UK41 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS28Q9UK41 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VPS28Q9UK41 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS28Q9UK41 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VPS28Q9UK41 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS28Q9UK41 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC18.8■□□□□ 0.6
VPS28Q9UK41 AC009102.3-201ENST00000623118 1491 ntBASIC18.8■□□□□ 0.6
VPS28Q9UK41 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC18.8■□□□□ 0.6
VPS28Q9UK41 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms