Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 AC104390.1-201ENST00000555663 520 ntBASIC21.05■□□□□ 0.96
DDX41Q9UJV9 AC011498.5-201ENST00000592027 486 ntBASIC21.05■□□□□ 0.96
DDX41Q9UJV9 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
DDX41Q9UJV9 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
DDX41Q9UJV9 BCL10-202ENST00000620248 774 ntTSL 5 BASIC21.05■□□□□ 0.96
DDX41Q9UJV9 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
DDX41Q9UJV9 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
DDX41Q9UJV9 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
DDX41Q9UJV9 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC21.05■□□□□ 0.96
DDX41Q9UJV9 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC21.05■□□□□ 0.96
DDX41Q9UJV9 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC21.05■□□□□ 0.96
DDX41Q9UJV9 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC21.05■□□□□ 0.96
DDX41Q9UJV9 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC21.05■□□□□ 0.96
DDX41Q9UJV9 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
DDX41Q9UJV9 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
DDX41Q9UJV9 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC21.04■□□□□ 0.96
DDX41Q9UJV9 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
DDX41Q9UJV9 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
DDX41Q9UJV9 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
DDX41Q9UJV9 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
DDX41Q9UJV9 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
DDX41Q9UJV9 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
DDX41Q9UJV9 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
DDX41Q9UJV9 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
DDX41Q9UJV9 IPPK-202ENST00000375522 882 ntTSL 3 BASIC21.04■□□□□ 0.96
DDX41Q9UJV9 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC21.04■□□□□ 0.96
DDX41Q9UJV9 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
DDX41Q9UJV9 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
DDX41Q9UJV9 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
DDX41Q9UJV9 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
DDX41Q9UJV9 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC21.04■□□□□ 0.96
DDX41Q9UJV9 AL391807.1-203ENST00000604392 2365 ntBASIC21.04■□□□□ 0.96
DDX41Q9UJV9 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
DDX41Q9UJV9 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
DDX41Q9UJV9 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
DDX41Q9UJV9 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
DDX41Q9UJV9 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
DDX41Q9UJV9 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
DDX41Q9UJV9 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC21.03■□□□□ 0.96
DDX41Q9UJV9 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
DDX41Q9UJV9 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC21.03■□□□□ 0.96
DDX41Q9UJV9 ELP6-205ENST00000439305 880 ntTSL 2 BASIC21.03■□□□□ 0.96
DDX41Q9UJV9 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC21.03■□□□□ 0.96
DDX41Q9UJV9 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC21.03■□□□□ 0.96
DDX41Q9UJV9 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC21.03■□□□□ 0.96
DDX41Q9UJV9 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
DDX41Q9UJV9 AL136038.4-201ENST00000603606 1261 ntBASIC21.03■□□□□ 0.96
DDX41Q9UJV9 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC21.03■□□□□ 0.96
DDX41Q9UJV9 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC21.03■□□□□ 0.96
DDX41Q9UJV9 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC21.03■□□□□ 0.96
DDX41Q9UJV9 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
DDX41Q9UJV9 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC21.03■□□□□ 0.96
DDX41Q9UJV9 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC21.03■□□□□ 0.96
DDX41Q9UJV9 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
DDX41Q9UJV9 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC21.02■□□□□ 0.96
DDX41Q9UJV9 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
DDX41Q9UJV9 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC21.02■□□□□ 0.96
DDX41Q9UJV9 AL162741.1-201ENST00000565563 1558 ntBASIC21.02■□□□□ 0.96
DDX41Q9UJV9 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
DDX41Q9UJV9 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC21.02■□□□□ 0.96
DDX41Q9UJV9 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
DDX41Q9UJV9 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC21.02■□□□□ 0.96
DDX41Q9UJV9 MIR662-201ENST00000384847 95 ntBASIC21.02■□□□□ 0.96
DDX41Q9UJV9 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC21.02■□□□□ 0.96
DDX41Q9UJV9 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC21.02■□□□□ 0.96
DDX41Q9UJV9 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC21.02■□□□□ 0.96
DDX41Q9UJV9 CLEC4GP1-201ENST00000596555 870 ntBASIC21.02■□□□□ 0.96
DDX41Q9UJV9 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC21.02■□□□□ 0.96
DDX41Q9UJV9 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC21.02■□□□□ 0.96
DDX41Q9UJV9 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
DDX41Q9UJV9 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC21.02■□□□□ 0.96
DDX41Q9UJV9 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
DDX41Q9UJV9 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
DDX41Q9UJV9 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC21.02■□□□□ 0.96
DDX41Q9UJV9 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
DDX41Q9UJV9 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
DDX41Q9UJV9 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC21.02■□□□□ 0.95
DDX41Q9UJV9 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
DDX41Q9UJV9 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC21.02■□□□□ 0.95
DDX41Q9UJV9 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.95
DDX41Q9UJV9 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.95
DDX41Q9UJV9 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.95
DDX41Q9UJV9 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
DDX41Q9UJV9 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC21.02■□□□□ 0.95
DDX41Q9UJV9 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC21.02■□□□□ 0.95
DDX41Q9UJV9 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC21.02■□□□□ 0.95
DDX41Q9UJV9 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC21.01■□□□□ 0.95
DDX41Q9UJV9 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC21.01■□□□□ 0.95
DDX41Q9UJV9 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
DDX41Q9UJV9 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
DDX41Q9UJV9 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
DDX41Q9UJV9 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
DDX41Q9UJV9 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC21.01■□□□□ 0.95
DDX41Q9UJV9 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
DDX41Q9UJV9 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC21.01■□□□□ 0.95
DDX41Q9UJV9 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
DDX41Q9UJV9 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC21.01■□□□□ 0.95
DDX41Q9UJV9 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
DDX41Q9UJV9 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
DDX41Q9UJV9 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms