Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 TPM1-218ENST00000559281 851 ntTSL 5 BASIC19.49■□□□□ 0.71
PAAF1Q9BRP4 BMF-207ENST00000559701 630 ntTSL 3 BASIC19.49■□□□□ 0.71
PAAF1Q9BRP4 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PAAF1Q9BRP4 IGHV3OR16-7-201ENST00000604106 360 ntBASIC19.49■□□□□ 0.71
PAAF1Q9BRP4 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PAAF1Q9BRP4 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PAAF1Q9BRP4 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
PAAF1Q9BRP4 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PAAF1Q9BRP4 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
PAAF1Q9BRP4 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.49■□□□□ 0.71
PAAF1Q9BRP4 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
PAAF1Q9BRP4 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
PAAF1Q9BRP4 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
PAAF1Q9BRP4 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
PAAF1Q9BRP4 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PAAF1Q9BRP4 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PAAF1Q9BRP4 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PAAF1Q9BRP4 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PAAF1Q9BRP4 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
PAAF1Q9BRP4 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PAAF1Q9BRP4 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PAAF1Q9BRP4 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PAAF1Q9BRP4 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
PAAF1Q9BRP4 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC19.48■□□□□ 0.71
PAAF1Q9BRP4 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PAAF1Q9BRP4 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC19.48■□□□□ 0.71
PAAF1Q9BRP4 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC19.48■□□□□ 0.71
PAAF1Q9BRP4 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
PAAF1Q9BRP4 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC19.48■□□□□ 0.71
PAAF1Q9BRP4 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
PAAF1Q9BRP4 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PAAF1Q9BRP4 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PAAF1Q9BRP4 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PAAF1Q9BRP4 AP000974.1-201ENST00000623909 2387 ntBASIC19.48■□□□□ 0.71
PAAF1Q9BRP4 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
PAAF1Q9BRP4 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC19.48■□□□□ 0.71
PAAF1Q9BRP4 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC19.48■□□□□ 0.71
PAAF1Q9BRP4 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PAAF1Q9BRP4 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
PAAF1Q9BRP4 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
PAAF1Q9BRP4 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PAAF1Q9BRP4 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
PAAF1Q9BRP4 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PAAF1Q9BRP4 AC120498.9-201ENST00000339021 3867 ntBASIC19.47■□□□□ 0.71
PAAF1Q9BRP4 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
PAAF1Q9BRP4 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PAAF1Q9BRP4 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
PAAF1Q9BRP4 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
PAAF1Q9BRP4 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC19.47■□□□□ 0.71
PAAF1Q9BRP4 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
PAAF1Q9BRP4 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
PAAF1Q9BRP4 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC19.47■□□□□ 0.71
PAAF1Q9BRP4 LSM5-204ENST00000409909 740 ntTSL 2 BASIC19.47■□□□□ 0.71
PAAF1Q9BRP4 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
PAAF1Q9BRP4 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC19.47■□□□□ 0.71
PAAF1Q9BRP4 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC19.47■□□□□ 0.71
PAAF1Q9BRP4 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
PAAF1Q9BRP4 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
PAAF1Q9BRP4 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
PAAF1Q9BRP4 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
PAAF1Q9BRP4 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC19.47■□□□□ 0.71
PAAF1Q9BRP4 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
PAAF1Q9BRP4 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
PAAF1Q9BRP4 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
PAAF1Q9BRP4 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PAAF1Q9BRP4 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PAAF1Q9BRP4 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PAAF1Q9BRP4 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PAAF1Q9BRP4 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
PAAF1Q9BRP4 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
PAAF1Q9BRP4 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PAAF1Q9BRP4 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC19.46■□□□□ 0.71
PAAF1Q9BRP4 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC19.46■□□□□ 0.71
PAAF1Q9BRP4 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
PAAF1Q9BRP4 AL160237.2-201ENST00000556165 472 ntBASIC19.46■□□□□ 0.71
PAAF1Q9BRP4 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
PAAF1Q9BRP4 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC19.46■□□□□ 0.71
PAAF1Q9BRP4 AC008687.5-201ENST00000593746 558 ntBASIC19.46■□□□□ 0.71
PAAF1Q9BRP4 LINC01711-201ENST00000598340 967 ntBASIC19.46■□□□□ 0.71
PAAF1Q9BRP4 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
PAAF1Q9BRP4 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC19.46■□□□□ 0.71
PAAF1Q9BRP4 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC19.46■□□□□ 0.71
PAAF1Q9BRP4 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
PAAF1Q9BRP4 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
PAAF1Q9BRP4 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC19.46■□□□□ 0.71
PAAF1Q9BRP4 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
PAAF1Q9BRP4 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PAAF1Q9BRP4 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PAAF1Q9BRP4 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PAAF1Q9BRP4 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PAAF1Q9BRP4 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PAAF1Q9BRP4 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PAAF1Q9BRP4 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC19.45■□□□□ 0.7
PAAF1Q9BRP4 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PAAF1Q9BRP4 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC19.45■□□□□ 0.7
PAAF1Q9BRP4 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
PAAF1Q9BRP4 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PAAF1Q9BRP4 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PAAF1Q9BRP4 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PAAF1Q9BRP4 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC19.45■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms