Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP28Q96RU2 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP28Q96RU2 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
USP28Q96RU2 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC20.95■□□□□ 0.94
USP28Q96RU2 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
USP28Q96RU2 LTB4R2-202ENST00000528054 3092 ntBASIC20.95■□□□□ 0.94
USP28Q96RU2 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC20.95■□□□□ 0.94
USP28Q96RU2 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC20.95■□□□□ 0.94
USP28Q96RU2 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP28Q96RU2 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC20.95■□□□□ 0.94
USP28Q96RU2 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
USP28Q96RU2 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC20.95■□□□□ 0.94
USP28Q96RU2 BX088651.1-201ENST00000540551 451 ntBASIC20.95■□□□□ 0.94
USP28Q96RU2 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC20.95■□□□□ 0.94
USP28Q96RU2 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC20.95■□□□□ 0.94
USP28Q96RU2 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC20.95■□□□□ 0.94
USP28Q96RU2 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
USP28Q96RU2 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
USP28Q96RU2 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
USP28Q96RU2 HLA-DQB1-201ENST00000374943 1656 ntBASIC20.95■□□□□ 0.94
USP28Q96RU2 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP28Q96RU2 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP28Q96RU2 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
USP28Q96RU2 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP28Q96RU2 KRT8P9-201ENST00000558927 1449 ntBASIC20.95■□□□□ 0.94
USP28Q96RU2 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
USP28Q96RU2 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP28Q96RU2 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP28Q96RU2 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
USP28Q96RU2 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP28Q96RU2 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP28Q96RU2 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC20.94■□□□□ 0.94
USP28Q96RU2 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP28Q96RU2 AC093010.1-201ENST00000473625 1624 ntBASIC20.94■□□□□ 0.94
USP28Q96RU2 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP28Q96RU2 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP28Q96RU2 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC20.94■□□□□ 0.94
USP28Q96RU2 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC20.94■□□□□ 0.94
USP28Q96RU2 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC20.94■□□□□ 0.94
USP28Q96RU2 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC20.94■□□□□ 0.94
USP28Q96RU2 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC20.94■□□□□ 0.94
USP28Q96RU2 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC20.94■□□□□ 0.94
USP28Q96RU2 AC116562.4-202ENST00000641738 218 ntBASIC20.94■□□□□ 0.94
USP28Q96RU2 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP28Q96RU2 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC20.94■□□□□ 0.94
USP28Q96RU2 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP28Q96RU2 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP28Q96RU2 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC20.94■□□□□ 0.94
USP28Q96RU2 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
USP28Q96RU2 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC20.94■□□□□ 0.94
USP28Q96RU2 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
USP28Q96RU2 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
USP28Q96RU2 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC20.94■□□□□ 0.94
USP28Q96RU2 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP28Q96RU2 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP28Q96RU2 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
USP28Q96RU2 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP28Q96RU2 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC20.93■□□□□ 0.94
USP28Q96RU2 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
USP28Q96RU2 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC20.93■□□□□ 0.94
USP28Q96RU2 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
USP28Q96RU2 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC20.93■□□□□ 0.94
USP28Q96RU2 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
USP28Q96RU2 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
USP28Q96RU2 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP28Q96RU2 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
USP28Q96RU2 AC104390.1-201ENST00000555663 520 ntBASIC20.93■□□□□ 0.94
USP28Q96RU2 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
USP28Q96RU2 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP28Q96RU2 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP28Q96RU2 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP28Q96RU2 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP28Q96RU2 CYP2D8P-201ENST00000433633 1490 ntBASIC20.93■□□□□ 0.94
USP28Q96RU2 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC20.93■□□□□ 0.94
USP28Q96RU2 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
USP28Q96RU2 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP28Q96RU2 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP28Q96RU2 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
USP28Q96RU2 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC20.92■□□□□ 0.94
USP28Q96RU2 AL024508.2-201ENST00000607749 1894 ntBASIC20.92■□□□□ 0.94
USP28Q96RU2 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC20.92■□□□□ 0.94
USP28Q96RU2 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
USP28Q96RU2 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
USP28Q96RU2 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
USP28Q96RU2 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP28Q96RU2 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP28Q96RU2 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP28Q96RU2 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC20.92■□□□□ 0.94
USP28Q96RU2 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP28Q96RU2 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP28Q96RU2 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP28Q96RU2 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP28Q96RU2 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
USP28Q96RU2 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP28Q96RU2 TSPY14P-201ENST00000303979 915 ntBASIC20.92■□□□□ 0.94
USP28Q96RU2 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
USP28Q96RU2 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
USP28Q96RU2 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
USP28Q96RU2 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC20.92■□□□□ 0.94
USP28Q96RU2 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms