Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC14.18□□□□□ -0.14
CCDC140Q96MF4 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC14.18□□□□□ -0.14
CCDC140Q96MF4 REEP1-209ENST00000541910 969 ntTSL 2 BASIC14.18□□□□□ -0.14
CCDC140Q96MF4 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC14.18□□□□□ -0.14
CCDC140Q96MF4 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC14.18□□□□□ -0.14
CCDC140Q96MF4 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
CCDC140Q96MF4 AC006011.2-201ENST00000621313 1158 ntBASIC14.18□□□□□ -0.14
CCDC140Q96MF4 AC011558.1-201ENST00000623459 338 ntBASIC14.18□□□□□ -0.14
CCDC140Q96MF4 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
CCDC140Q96MF4 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC14.18□□□□□ -0.14
CCDC140Q96MF4 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC140Q96MF4 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC140Q96MF4 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC140Q96MF4 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC140Q96MF4 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC140Q96MF4 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC140Q96MF4 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CCDC140Q96MF4 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC14.18□□□□□ -0.14
CCDC140Q96MF4 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC14.18□□□□□ -0.14
CCDC140Q96MF4 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC14.18□□□□□ -0.14
CCDC140Q96MF4 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
CCDC140Q96MF4 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC140Q96MF4 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC140Q96MF4 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC140Q96MF4 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC14.17□□□□□ -0.14
CCDC140Q96MF4 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC140Q96MF4 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC140Q96MF4 REXO1L9P-201ENST00000604264 2108 ntBASIC14.17□□□□□ -0.14
CCDC140Q96MF4 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
CCDC140Q96MF4 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC14.17□□□□□ -0.14
CCDC140Q96MF4 AL096828.2-201ENST00000567259 1965 ntBASIC14.17□□□□□ -0.14
CCDC140Q96MF4 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC140Q96MF4 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC140Q96MF4 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC140Q96MF4 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC140Q96MF4 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
CCDC140Q96MF4 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC140Q96MF4 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC14.17□□□□□ -0.14
CCDC140Q96MF4 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC140Q96MF4 RASA4DP-201ENST00000460726 1199 ntBASIC14.17□□□□□ -0.14
CCDC140Q96MF4 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC14.17□□□□□ -0.14
CCDC140Q96MF4 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC140Q96MF4 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC14.17□□□□□ -0.14
CCDC140Q96MF4 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC14.17□□□□□ -0.14
CCDC140Q96MF4 ARL16-209ENST00000573715 763 ntTSL 3 BASIC14.17□□□□□ -0.14
CCDC140Q96MF4 ARL16-211ENST00000576135 694 ntTSL 3 BASIC14.17□□□□□ -0.14
CCDC140Q96MF4 RBM42-202ENST00000586618 771 ntTSL 3 BASIC14.17□□□□□ -0.14
CCDC140Q96MF4 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
CCDC140Q96MF4 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC14.17□□□□□ -0.14
CCDC140Q96MF4 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC140Q96MF4 PBK-203ENST00000522944 1499 ntTSL 2 BASIC14.17□□□□□ -0.14
CCDC140Q96MF4 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC140Q96MF4 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC140Q96MF4 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC140Q96MF4 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC140Q96MF4 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC14.17□□□□□ -0.14
CCDC140Q96MF4 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC140Q96MF4 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
CCDC140Q96MF4 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
CCDC140Q96MF4 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC140Q96MF4 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC140Q96MF4 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC14.16□□□□□ -0.14
CCDC140Q96MF4 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC140Q96MF4 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
CCDC140Q96MF4 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
CCDC140Q96MF4 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
CCDC140Q96MF4 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC140Q96MF4 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC14.16□□□□□ -0.14
CCDC140Q96MF4 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC140Q96MF4 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
CCDC140Q96MF4 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC140Q96MF4 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC140Q96MF4 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC140Q96MF4 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC140Q96MF4 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC140Q96MF4 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC14.16□□□□□ -0.14
CCDC140Q96MF4 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
CCDC140Q96MF4 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC14.16□□□□□ -0.14
CCDC140Q96MF4 SPDYE15P-201ENST00000424157 909 ntBASIC14.16□□□□□ -0.14
CCDC140Q96MF4 PVRIG2P-201ENST00000435460 978 ntBASIC14.16□□□□□ -0.14
CCDC140Q96MF4 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC140Q96MF4 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC140Q96MF4 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC14.16□□□□□ -0.14
CCDC140Q96MF4 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC140Q96MF4 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC14.16□□□□□ -0.14
CCDC140Q96MF4 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC140Q96MF4 USF2-205ENST00000594064 1179 ntTSL 2 BASIC14.16□□□□□ -0.14
CCDC140Q96MF4 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
CCDC140Q96MF4 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC140Q96MF4 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC14.16□□□□□ -0.14
CCDC140Q96MF4 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC14.16□□□□□ -0.14
CCDC140Q96MF4 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC14.16□□□□□ -0.14
CCDC140Q96MF4 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
CCDC140Q96MF4 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC140Q96MF4 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC140Q96MF4 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC140Q96MF4 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
CCDC140Q96MF4 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC140Q96MF4 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC140Q96MF4 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms