Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AL135905.2-201ENST00000584934 1404 ntBASIC16.99■□□□□ 0.31
ZNF540Q8NDQ6 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
ZNF540Q8NDQ6 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
ZNF540Q8NDQ6 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC16.99■□□□□ 0.31
ZNF540Q8NDQ6 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
ZNF540Q8NDQ6 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC16.99■□□□□ 0.31
ZNF540Q8NDQ6 TSPY21P-201ENST00000433481 731 ntBASIC16.99■□□□□ 0.31
ZNF540Q8NDQ6 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
ZNF540Q8NDQ6 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC16.99■□□□□ 0.31
ZNF540Q8NDQ6 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
ZNF540Q8NDQ6 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
ZNF540Q8NDQ6 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
ZNF540Q8NDQ6 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
ZNF540Q8NDQ6 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC16.99■□□□□ 0.31
ZNF540Q8NDQ6 PRKY-204ENST00000533551 1019 ntBASIC16.99■□□□□ 0.31
ZNF540Q8NDQ6 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
ZNF540Q8NDQ6 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
ZNF540Q8NDQ6 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
ZNF540Q8NDQ6 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
ZNF540Q8NDQ6 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
ZNF540Q8NDQ6 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
ZNF540Q8NDQ6 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
ZNF540Q8NDQ6 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
ZNF540Q8NDQ6 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
ZNF540Q8NDQ6 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
ZNF540Q8NDQ6 GAS2L1P1-201ENST00000420145 1480 ntBASIC16.99■□□□□ 0.31
ZNF540Q8NDQ6 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC16.99■□□□□ 0.31
ZNF540Q8NDQ6 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC16.99■□□□□ 0.31
ZNF540Q8NDQ6 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
ZNF540Q8NDQ6 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
ZNF540Q8NDQ6 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC16.98■□□□□ 0.31
ZNF540Q8NDQ6 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC16.98■□□□□ 0.31
ZNF540Q8NDQ6 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
ZNF540Q8NDQ6 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
ZNF540Q8NDQ6 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
ZNF540Q8NDQ6 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
ZNF540Q8NDQ6 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
ZNF540Q8NDQ6 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
ZNF540Q8NDQ6 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC16.98■□□□□ 0.31
ZNF540Q8NDQ6 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC16.98■□□□□ 0.31
ZNF540Q8NDQ6 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
ZNF540Q8NDQ6 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC16.98■□□□□ 0.31
ZNF540Q8NDQ6 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
ZNF540Q8NDQ6 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
ZNF540Q8NDQ6 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC16.98■□□□□ 0.31
ZNF540Q8NDQ6 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
ZNF540Q8NDQ6 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC16.98■□□□□ 0.31
ZNF540Q8NDQ6 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
ZNF540Q8NDQ6 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC16.98■□□□□ 0.31
ZNF540Q8NDQ6 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC16.98■□□□□ 0.31
ZNF540Q8NDQ6 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
ZNF540Q8NDQ6 MIR4497-201ENST00000583208 89 ntBASIC16.98■□□□□ 0.31
ZNF540Q8NDQ6 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC16.98■□□□□ 0.31
ZNF540Q8NDQ6 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC16.98■□□□□ 0.31
ZNF540Q8NDQ6 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC16.98■□□□□ 0.31
ZNF540Q8NDQ6 AC124283.5-201ENST00000624661 1809 ntBASIC16.98■□□□□ 0.31
ZNF540Q8NDQ6 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
ZNF540Q8NDQ6 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
ZNF540Q8NDQ6 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
ZNF540Q8NDQ6 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
ZNF540Q8NDQ6 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
ZNF540Q8NDQ6 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC16.97■□□□□ 0.31
ZNF540Q8NDQ6 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
ZNF540Q8NDQ6 REXO1L9P-201ENST00000604264 2108 ntBASIC16.97■□□□□ 0.31
ZNF540Q8NDQ6 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
ZNF540Q8NDQ6 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC16.97■□□□□ 0.31
ZNF540Q8NDQ6 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
ZNF540Q8NDQ6 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
ZNF540Q8NDQ6 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC16.97■□□□□ 0.31
ZNF540Q8NDQ6 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
ZNF540Q8NDQ6 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
ZNF540Q8NDQ6 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC16.97■□□□□ 0.31
ZNF540Q8NDQ6 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
ZNF540Q8NDQ6 AC239809.2-201ENST00000415381 517 ntBASIC16.97■□□□□ 0.31
ZNF540Q8NDQ6 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC16.97■□□□□ 0.31
ZNF540Q8NDQ6 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC16.97■□□□□ 0.31
ZNF540Q8NDQ6 AC133681.1-201ENST00000465482 601 ntBASIC16.97■□□□□ 0.31
ZNF540Q8NDQ6 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC16.97■□□□□ 0.31
ZNF540Q8NDQ6 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC16.97■□□□□ 0.31
ZNF540Q8NDQ6 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
ZNF540Q8NDQ6 MTDHP1-201ENST00000605323 784 ntBASIC16.97■□□□□ 0.31
ZNF540Q8NDQ6 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
ZNF540Q8NDQ6 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
ZNF540Q8NDQ6 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
ZNF540Q8NDQ6 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC16.97■□□□□ 0.31
ZNF540Q8NDQ6 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
ZNF540Q8NDQ6 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
ZNF540Q8NDQ6 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC16.97■□□□□ 0.31
ZNF540Q8NDQ6 CROCCP1-201ENST00000426910 5675 ntBASIC16.97■□□□□ 0.31
ZNF540Q8NDQ6 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC16.97■□□□□ 0.31
ZNF540Q8NDQ6 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
ZNF540Q8NDQ6 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
ZNF540Q8NDQ6 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC16.97■□□□□ 0.31
ZNF540Q8NDQ6 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC16.96■□□□□ 0.31
ZNF540Q8NDQ6 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ZNF540Q8NDQ6 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC16.96■□□□□ 0.31
ZNF540Q8NDQ6 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ZNF540Q8NDQ6 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC16.96■□□□□ 0.31
ZNF540Q8NDQ6 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
ZNF540Q8NDQ6 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms