Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
RNFT1Q5M7Z0 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
RNFT1Q5M7Z0 LSM5-204ENST00000409909 740 ntTSL 2 BASIC16.46■□□□□ 0.23
RNFT1Q5M7Z0 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC16.46■□□□□ 0.23
RNFT1Q5M7Z0 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RNFT1Q5M7Z0 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC16.46■□□□□ 0.23
RNFT1Q5M7Z0 AP002469.2-201ENST00000531724 424 ntBASIC16.46■□□□□ 0.23
RNFT1Q5M7Z0 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RNFT1Q5M7Z0 IGHV3OR16-7-201ENST00000604106 360 ntBASIC16.46■□□□□ 0.23
RNFT1Q5M7Z0 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
RNFT1Q5M7Z0 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC16.46■□□□□ 0.23
RNFT1Q5M7Z0 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RNFT1Q5M7Z0 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
RNFT1Q5M7Z0 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
RNFT1Q5M7Z0 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.23
RNFT1Q5M7Z0 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RNFT1Q5M7Z0 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
RNFT1Q5M7Z0 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RNFT1Q5M7Z0 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
RNFT1Q5M7Z0 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.22
RNFT1Q5M7Z0 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.22
RNFT1Q5M7Z0 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC16.45■□□□□ 0.22
RNFT1Q5M7Z0 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNFT1Q5M7Z0 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNFT1Q5M7Z0 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNFT1Q5M7Z0 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RNFT1Q5M7Z0 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RNFT1Q5M7Z0 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNFT1Q5M7Z0 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC16.45■□□□□ 0.22
RNFT1Q5M7Z0 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC16.45■□□□□ 0.22
RNFT1Q5M7Z0 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNFT1Q5M7Z0 DDT-203ENST00000403754 569 ntTSL 3 BASIC16.45■□□□□ 0.22
RNFT1Q5M7Z0 TSPY12P-201ENST00000421279 868 ntBASIC16.45■□□□□ 0.22
RNFT1Q5M7Z0 DDT-206ENST00000430101 573 ntTSL 2 BASIC16.45■□□□□ 0.22
RNFT1Q5M7Z0 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC16.45■□□□□ 0.22
RNFT1Q5M7Z0 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC16.45■□□□□ 0.22
RNFT1Q5M7Z0 AL121912.1-201ENST00000603683 238 ntBASIC16.45■□□□□ 0.22
RNFT1Q5M7Z0 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNFT1Q5M7Z0 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RNFT1Q5M7Z0 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RNFT1Q5M7Z0 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNFT1Q5M7Z0 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC16.45■□□□□ 0.22
RNFT1Q5M7Z0 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RNFT1Q5M7Z0 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC16.45■□□□□ 0.22
RNFT1Q5M7Z0 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNFT1Q5M7Z0 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC16.45■□□□□ 0.22
RNFT1Q5M7Z0 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC16.45■□□□□ 0.22
RNFT1Q5M7Z0 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RNFT1Q5M7Z0 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC16.45■□□□□ 0.22
RNFT1Q5M7Z0 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
RNFT1Q5M7Z0 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC16.45■□□□□ 0.22
RNFT1Q5M7Z0 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RNFT1Q5M7Z0 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RNFT1Q5M7Z0 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
RNFT1Q5M7Z0 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
RNFT1Q5M7Z0 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
RNFT1Q5M7Z0 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
RNFT1Q5M7Z0 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC16.44■□□□□ 0.22
RNFT1Q5M7Z0 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC16.44■□□□□ 0.22
RNFT1Q5M7Z0 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
RNFT1Q5M7Z0 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC16.44■□□□□ 0.22
RNFT1Q5M7Z0 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
RNFT1Q5M7Z0 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
RNFT1Q5M7Z0 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
RNFT1Q5M7Z0 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
RNFT1Q5M7Z0 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
RNFT1Q5M7Z0 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC16.44■□□□□ 0.22
RNFT1Q5M7Z0 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC16.44■□□□□ 0.22
RNFT1Q5M7Z0 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC16.44■□□□□ 0.22
RNFT1Q5M7Z0 AC068472.1-201ENST00000474589 881 ntBASIC16.44■□□□□ 0.22
RNFT1Q5M7Z0 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC16.44■□□□□ 0.22
RNFT1Q5M7Z0 AF238378.1-201ENST00000526806 358 ntBASIC16.44■□□□□ 0.22
RNFT1Q5M7Z0 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC16.44■□□□□ 0.22
RNFT1Q5M7Z0 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC16.44■□□□□ 0.22
RNFT1Q5M7Z0 CALM3-211ENST00000598871 561 ntTSL 4 BASIC16.44■□□□□ 0.22
RNFT1Q5M7Z0 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC16.44■□□□□ 0.22
RNFT1Q5M7Z0 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
RNFT1Q5M7Z0 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
RNFT1Q5M7Z0 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
RNFT1Q5M7Z0 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
RNFT1Q5M7Z0 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
RNFT1Q5M7Z0 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
RNFT1Q5M7Z0 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
RNFT1Q5M7Z0 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC16.44■□□□□ 0.22
RNFT1Q5M7Z0 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC16.44■□□□□ 0.22
RNFT1Q5M7Z0 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC16.43■□□□□ 0.22
RNFT1Q5M7Z0 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
RNFT1Q5M7Z0 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
RNFT1Q5M7Z0 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC16.43■□□□□ 0.22
RNFT1Q5M7Z0 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
RNFT1Q5M7Z0 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
RNFT1Q5M7Z0 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
RNFT1Q5M7Z0 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC16.43■□□□□ 0.22
RNFT1Q5M7Z0 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
RNFT1Q5M7Z0 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
RNFT1Q5M7Z0 MRPL3P1-201ENST00000400109 1033 ntBASIC16.43■□□□□ 0.22
RNFT1Q5M7Z0 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC16.43■□□□□ 0.22
RNFT1Q5M7Z0 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC16.43■□□□□ 0.22
RNFT1Q5M7Z0 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC16.43■□□□□ 0.22
RNFT1Q5M7Z0 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms