Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCNA1P78396 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CCNA1P78396 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC20.8■□□□□ 0.92
CCNA1P78396 AC092865.5-201ENST00000545435 363 ntBASIC20.8■□□□□ 0.92
CCNA1P78396 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC20.8■□□□□ 0.92
CCNA1P78396 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC20.8■□□□□ 0.92
CCNA1P78396 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC20.8■□□□□ 0.92
CCNA1P78396 AP001269.4-201ENST00000609611 512 ntBASIC20.8■□□□□ 0.92
CCNA1P78396 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC20.8■□□□□ 0.92
CCNA1P78396 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
CCNA1P78396 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCNA1P78396 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CCNA1P78396 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCNA1P78396 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC20.79■□□□□ 0.92
CCNA1P78396 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCNA1P78396 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.79■□□□□ 0.92
CCNA1P78396 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCNA1P78396 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
CCNA1P78396 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCNA1P78396 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.79■□□□□ 0.92
CCNA1P78396 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC20.79■□□□□ 0.92
CCNA1P78396 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC20.79■□□□□ 0.92
CCNA1P78396 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC20.79■□□□□ 0.92
CCNA1P78396 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
CCNA1P78396 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCNA1P78396 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
CCNA1P78396 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCNA1P78396 POLD2P1-201ENST00000511220 997 ntBASIC20.79■□□□□ 0.92
CCNA1P78396 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC20.79■□□□□ 0.92
CCNA1P78396 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC20.79■□□□□ 0.92
CCNA1P78396 AC011467.2-201ENST00000598425 242 ntBASIC20.79■□□□□ 0.92
CCNA1P78396 AL049840.3-201ENST00000602669 611 ntBASIC20.79■□□□□ 0.92
CCNA1P78396 CAND2-206ENST00000626378 333 ntTSL 5 BASIC20.79■□□□□ 0.92
CCNA1P78396 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC20.79■□□□□ 0.92
CCNA1P78396 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
CCNA1P78396 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCNA1P78396 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.79■□□□□ 0.92
CCNA1P78396 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCNA1P78396 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCNA1P78396 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCNA1P78396 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
CCNA1P78396 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCNA1P78396 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCNA1P78396 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCNA1P78396 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC20.78■□□□□ 0.92
CCNA1P78396 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCNA1P78396 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCNA1P78396 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC20.78■□□□□ 0.92
CCNA1P78396 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCNA1P78396 RPL18-209ENST00000550645 463 ntTSL 5 BASIC20.78■□□□□ 0.92
CCNA1P78396 RPL18-214ENST00000552588 559 ntTSL 3 BASIC20.78■□□□□ 0.92
CCNA1P78396 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC20.78■□□□□ 0.92
CCNA1P78396 PIN1-206ENST00000587625 878 ntTSL 2 BASIC20.78■□□□□ 0.92
CCNA1P78396 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCNA1P78396 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC20.78■□□□□ 0.92
CCNA1P78396 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCNA1P78396 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC20.78■□□□□ 0.92
CCNA1P78396 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
CCNA1P78396 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC20.78■□□□□ 0.92
CCNA1P78396 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCNA1P78396 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCNA1P78396 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC20.77■□□□□ 0.92
CCNA1P78396 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCNA1P78396 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC20.77■□□□□ 0.92
CCNA1P78396 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCNA1P78396 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCNA1P78396 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
CCNA1P78396 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCNA1P78396 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCNA1P78396 SNCG-201ENST00000348795 684 ntTSL 2 BASIC20.77■□□□□ 0.92
CCNA1P78396 MIR1233-2-201ENST00000408138 82 ntBASIC20.77■□□□□ 0.92
CCNA1P78396 MIR1233-1-201ENST00000408722 82 ntBASIC20.77■□□□□ 0.92
CCNA1P78396 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC20.77■□□□□ 0.92
CCNA1P78396 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC20.77■□□□□ 0.92
CCNA1P78396 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC20.77■□□□□ 0.92
CCNA1P78396 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC20.77■□□□□ 0.92
CCNA1P78396 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC20.77■□□□□ 0.92
CCNA1P78396 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCNA1P78396 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.77■□□□□ 0.92
CCNA1P78396 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCNA1P78396 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.77■□□□□ 0.92
CCNA1P78396 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCNA1P78396 AC125634.1-201ENST00000438758 1403 ntBASIC20.77■□□□□ 0.91
CCNA1P78396 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
CCNA1P78396 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
CCNA1P78396 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC20.77■□□□□ 0.91
CCNA1P78396 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCNA1P78396 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCNA1P78396 AL161938.1-201ENST00000569833 2180 ntBASIC20.76■□□□□ 0.91
CCNA1P78396 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCNA1P78396 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCNA1P78396 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
CCNA1P78396 HNRNPDP1-201ENST00000439535 754 ntBASIC20.76■□□□□ 0.91
CCNA1P78396 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC20.76■□□□□ 0.91
CCNA1P78396 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC20.76■□□□□ 0.91
CCNA1P78396 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCNA1P78396 AC116407.3-201ENST00000623905 1129 ntBASIC20.76■□□□□ 0.91
CCNA1P78396 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
CCNA1P78396 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
CCNA1P78396 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms