Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.75■□□□□ 0.43
FOXA1P55317 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
FOXA1P55317 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
FOXA1P55317 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
FOXA1P55317 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
FOXA1P55317 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
FOXA1P55317 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
FOXA1P55317 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
FOXA1P55317 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
FOXA1P55317 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
FOXA1P55317 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC17.75■□□□□ 0.43
FOXA1P55317 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC17.75■□□□□ 0.43
FOXA1P55317 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
FOXA1P55317 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC17.75■□□□□ 0.43
FOXA1P55317 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC17.75■□□□□ 0.43
FOXA1P55317 GRAMD4P8-201ENST00000605465 1115 ntBASIC17.75■□□□□ 0.43
FOXA1P55317 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
FOXA1P55317 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
FOXA1P55317 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
FOXA1P55317 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
FOXA1P55317 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
FOXA1P55317 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
FOXA1P55317 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
FOXA1P55317 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
FOXA1P55317 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
FOXA1P55317 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
FOXA1P55317 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
FOXA1P55317 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
FOXA1P55317 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.74■□□□□ 0.43
FOXA1P55317 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.74■□□□□ 0.43
FOXA1P55317 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
FOXA1P55317 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.74■□□□□ 0.43
FOXA1P55317 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
FOXA1P55317 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
FOXA1P55317 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
FOXA1P55317 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
FOXA1P55317 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.74■□□□□ 0.43
FOXA1P55317 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
FOXA1P55317 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
FOXA1P55317 LINC01126-201ENST00000623515 1646 ntBASIC17.74■□□□□ 0.43
FOXA1P55317 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
FOXA1P55317 MIR149-201ENST00000384879 89 ntBASIC17.74■□□□□ 0.43
FOXA1P55317 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC17.74■□□□□ 0.43
FOXA1P55317 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
FOXA1P55317 RBM17P1-201ENST00000453646 1190 ntBASIC17.74■□□□□ 0.43
FOXA1P55317 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC17.74■□□□□ 0.43
FOXA1P55317 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC17.74■□□□□ 0.43
FOXA1P55317 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC17.74■□□□□ 0.43
FOXA1P55317 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC17.74■□□□□ 0.43
FOXA1P55317 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC17.74■□□□□ 0.43
FOXA1P55317 USP36-216ENST00000589424 970 ntTSL 5 BASIC17.74■□□□□ 0.43
FOXA1P55317 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC17.74■□□□□ 0.43
FOXA1P55317 CR769767.2-201ENST00000622735 460 ntBASIC17.74■□□□□ 0.43
FOXA1P55317 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
FOXA1P55317 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC17.74■□□□□ 0.43
FOXA1P55317 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
FOXA1P55317 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
FOXA1P55317 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.74■□□□□ 0.43
FOXA1P55317 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
FOXA1P55317 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC17.74■□□□□ 0.43
FOXA1P55317 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
FOXA1P55317 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
FOXA1P55317 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
FOXA1P55317 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
FOXA1P55317 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
FOXA1P55317 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17.73■□□□□ 0.43
FOXA1P55317 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
FOXA1P55317 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
FOXA1P55317 HOXB1-202ENST00000577092 1414 ntBASIC17.73■□□□□ 0.43
FOXA1P55317 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
FOXA1P55317 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
FOXA1P55317 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.73■□□□□ 0.43
FOXA1P55317 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
FOXA1P55317 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.73■□□□□ 0.43
FOXA1P55317 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
FOXA1P55317 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
FOXA1P55317 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
FOXA1P55317 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
FOXA1P55317 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
FOXA1P55317 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
FOXA1P55317 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC17.73■□□□□ 0.43
FOXA1P55317 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC17.73■□□□□ 0.43
FOXA1P55317 KRT18P23-201ENST00000435622 1283 ntBASIC17.73■□□□□ 0.43
FOXA1P55317 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC17.73■□□□□ 0.43
FOXA1P55317 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
FOXA1P55317 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC17.73■□□□□ 0.43
FOXA1P55317 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
FOXA1P55317 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
FOXA1P55317 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
FOXA1P55317 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
FOXA1P55317 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
FOXA1P55317 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC17.73■□□□□ 0.43
FOXA1P55317 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
FOXA1P55317 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
FOXA1P55317 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
FOXA1P55317 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.72■□□□□ 0.43
FOXA1P55317 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
FOXA1P55317 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
FOXA1P55317 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
FOXA1P55317 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms