Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC21.15■□□□□ 0.98
CTCFP49711 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
CTCFP49711 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
CTCFP49711 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC21.15■□□□□ 0.98
CTCFP49711 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CTCFP49711 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC21.15■□□□□ 0.98
CTCFP49711 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC21.15■□□□□ 0.98
CTCFP49711 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CTCFP49711 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC21.15■□□□□ 0.98
CTCFP49711 AC097374.2-201ENST00000618617 1306 ntBASIC21.15■□□□□ 0.98
CTCFP49711 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CTCFP49711 DANCR-204ENST00000444958 709 ntTSL 3 BASIC21.15■□□□□ 0.98
CTCFP49711 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CTCFP49711 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC21.15■□□□□ 0.98
CTCFP49711 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC21.15■□□□□ 0.98
CTCFP49711 AC005498.2-205ENST00000593218 784 ntBASIC21.15■□□□□ 0.98
CTCFP49711 MTDHP4-201ENST00000600287 670 ntBASIC21.15■□□□□ 0.98
CTCFP49711 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC21.15■□□□□ 0.98
CTCFP49711 AL078644.1-201ENST00000609881 752 ntBASIC21.15■□□□□ 0.98
CTCFP49711 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC21.15■□□□□ 0.98
CTCFP49711 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CTCFP49711 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CTCFP49711 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC21.15■□□□□ 0.98
CTCFP49711 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC21.15■□□□□ 0.98
CTCFP49711 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC21.15■□□□□ 0.98
CTCFP49711 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC21.15■□□□□ 0.98
CTCFP49711 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.98
CTCFP49711 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
CTCFP49711 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CTCFP49711 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
CTCFP49711 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
CTCFP49711 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
CTCFP49711 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
CTCFP49711 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CTCFP49711 AL139400.1-201ENST00000366220 510 ntBASIC21.14■□□□□ 0.97
CTCFP49711 FUOM-202ENST00000368551 628 ntTSL 3 BASIC21.14■□□□□ 0.97
CTCFP49711 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC21.14■□□□□ 0.97
CTCFP49711 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CTCFP49711 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC21.14■□□□□ 0.97
CTCFP49711 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC21.14■□□□□ 0.97
CTCFP49711 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC21.14■□□□□ 0.97
CTCFP49711 LSM12-202ENST00000585388 942 ntTSL 3 BASIC21.14■□□□□ 0.97
CTCFP49711 AL359881.2-201ENST00000602973 570 ntBASIC21.14■□□□□ 0.97
CTCFP49711 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CTCFP49711 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC21.14■□□□□ 0.97
CTCFP49711 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CTCFP49711 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CTCFP49711 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CTCFP49711 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CTCFP49711 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CTCFP49711 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC21.14■□□□□ 0.97
CTCFP49711 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
CTCFP49711 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CTCFP49711 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CTCFP49711 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CTCFP49711 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
CTCFP49711 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC21.13■□□□□ 0.97
CTCFP49711 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CTCFP49711 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CTCFP49711 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC21.13■□□□□ 0.97
CTCFP49711 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CTCFP49711 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
CTCFP49711 LAGE3P1-201ENST00000425356 484 ntBASIC21.13■□□□□ 0.97
CTCFP49711 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC21.13■□□□□ 0.97
CTCFP49711 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC21.13■□□□□ 0.97
CTCFP49711 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
CTCFP49711 AJ011932.1-201ENST00000621707 465 ntBASIC21.13■□□□□ 0.97
CTCFP49711 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
CTCFP49711 DET1-207ENST00000564406 2315 ntTSL 2 BASIC21.13■□□□□ 0.97
CTCFP49711 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CTCFP49711 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CTCFP49711 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CTCFP49711 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CTCFP49711 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CTCFP49711 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC21.12■□□□□ 0.97
CTCFP49711 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CTCFP49711 AL109659.2-201ENST00000606809 1674 ntBASIC21.12■□□□□ 0.97
CTCFP49711 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CTCFP49711 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CTCFP49711 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CTCFP49711 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CTCFP49711 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
CTCFP49711 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
CTCFP49711 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CTCFP49711 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC21.12■□□□□ 0.97
CTCFP49711 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CTCFP49711 SLC4A1APP2-201ENST00000424054 1259 ntBASIC21.12■□□□□ 0.97
CTCFP49711 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC21.12■□□□□ 0.97
CTCFP49711 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC21.12■□□□□ 0.97
CTCFP49711 MSRA-206ENST00000521209 814 ntTSL 3 BASIC21.12■□□□□ 0.97
CTCFP49711 AC087641.1-201ENST00000557561 1021 ntBASIC21.12■□□□□ 0.97
CTCFP49711 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CTCFP49711 AC092865.6-201ENST00000642101 219 ntBASIC21.12■□□□□ 0.97
CTCFP49711 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CTCFP49711 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CTCFP49711 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CTCFP49711 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CTCFP49711 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CTCFP49711 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC21.11■□□□□ 0.97
CTCFP49711 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms