Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
COL9A1P20849 AC114341.1-201ENST00000618070 349 ntBASIC18.8■□□□□ 0.6
COL9A1P20849 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
COL9A1P20849 AJ011932.1-201ENST00000621707 465 ntBASIC18.8■□□□□ 0.6
COL9A1P20849 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL9A1P20849 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.8■□□□□ 0.6
COL9A1P20849 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL9A1P20849 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL9A1P20849 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
COL9A1P20849 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.8■□□□□ 0.6
COL9A1P20849 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL9A1P20849 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC18.8■□□□□ 0.6
COL9A1P20849 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC18.8■□□□□ 0.6
COL9A1P20849 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL9A1P20849 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL9A1P20849 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
COL9A1P20849 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL9A1P20849 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL9A1P20849 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC18.79■□□□□ 0.6
COL9A1P20849 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL9A1P20849 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
COL9A1P20849 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC18.79■□□□□ 0.6
COL9A1P20849 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC18.79■□□□□ 0.6
COL9A1P20849 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC18.79■□□□□ 0.6
COL9A1P20849 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC18.79■□□□□ 0.6
COL9A1P20849 INIP-202ENST00000374236 874 ntTSL 2 BASIC18.79■□□□□ 0.6
COL9A1P20849 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL9A1P20849 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC18.79■□□□□ 0.6
COL9A1P20849 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC18.79■□□□□ 0.6
COL9A1P20849 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL9A1P20849 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC18.79■□□□□ 0.6
COL9A1P20849 OR7E14P-202ENST00000530490 1290 ntBASIC18.79■□□□□ 0.6
COL9A1P20849 PAM16-208ENST00000573553 722 ntTSL 2 BASIC18.79■□□□□ 0.6
COL9A1P20849 CECR7-204ENST00000609932 568 ntTSL 2 BASIC18.79■□□□□ 0.6
COL9A1P20849 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL9A1P20849 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC18.79■□□□□ 0.6
COL9A1P20849 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL9A1P20849 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC18.79■□□□□ 0.6
COL9A1P20849 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL9A1P20849 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL9A1P20849 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL9A1P20849 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL9A1P20849 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.79■□□□□ 0.6
COL9A1P20849 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL9A1P20849 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
COL9A1P20849 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC18.79■□□□□ 0.6
COL9A1P20849 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL9A1P20849 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL9A1P20849 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL9A1P20849 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
COL9A1P20849 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
COL9A1P20849 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
COL9A1P20849 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL9A1P20849 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL9A1P20849 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC18.78■□□□□ 0.6
COL9A1P20849 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC18.78■□□□□ 0.6
COL9A1P20849 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL9A1P20849 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC18.78■□□□□ 0.6
COL9A1P20849 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
COL9A1P20849 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
COL9A1P20849 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC18.78■□□□□ 0.6
COL9A1P20849 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL9A1P20849 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL9A1P20849 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC18.78■□□□□ 0.6
COL9A1P20849 KRT8P7-201ENST00000533003 1432 ntBASIC18.78■□□□□ 0.6
COL9A1P20849 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL9A1P20849 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL9A1P20849 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL9A1P20849 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC18.78■□□□□ 0.6
COL9A1P20849 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL9A1P20849 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC18.78■□□□□ 0.6
COL9A1P20849 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC18.78■□□□□ 0.6
COL9A1P20849 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC18.78■□□□□ 0.6
COL9A1P20849 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC18.78■□□□□ 0.6
COL9A1P20849 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC18.78■□□□□ 0.6
COL9A1P20849 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC18.78■□□□□ 0.6
COL9A1P20849 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC18.78■□□□□ 0.6
COL9A1P20849 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL9A1P20849 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC18.78■□□□□ 0.6
COL9A1P20849 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.78■□□□□ 0.6
COL9A1P20849 AL158211.5-201ENST00000623583 2518 ntBASIC18.78■□□□□ 0.6
COL9A1P20849 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL9A1P20849 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC18.78■□□□□ 0.6
COL9A1P20849 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL9A1P20849 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.78■□□□□ 0.6
COL9A1P20849 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL9A1P20849 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL9A1P20849 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL9A1P20849 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL9A1P20849 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL9A1P20849 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL9A1P20849 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL9A1P20849 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL9A1P20849 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL9A1P20849 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL9A1P20849 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC18.77■□□□□ 0.6
COL9A1P20849 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC18.77■□□□□ 0.6
COL9A1P20849 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL9A1P20849 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL9A1P20849 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms