Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC21.56■■□□□ 1.04
HLA-DOAP06340 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC21.56■■□□□ 1.04
HLA-DOAP06340 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HLA-DOAP06340 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
HLA-DOAP06340 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
HLA-DOAP06340 ADK-206ENST00000541550 2222 ntTSL 2 BASIC21.56■■□□□ 1.04
HLA-DOAP06340 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HLA-DOAP06340 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
HLA-DOAP06340 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC21.55■■□□□ 1.04
HLA-DOAP06340 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HLA-DOAP06340 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
HLA-DOAP06340 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC21.55■■□□□ 1.04
HLA-DOAP06340 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
HLA-DOAP06340 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
HLA-DOAP06340 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
HLA-DOAP06340 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC21.55■■□□□ 1.04
HLA-DOAP06340 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
HLA-DOAP06340 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
HLA-DOAP06340 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HLA-DOAP06340 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC21.55■■□□□ 1.04
HLA-DOAP06340 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC21.55■■□□□ 1.04
HLA-DOAP06340 KRT16P4-201ENST00000453883 522 ntBASIC21.55■■□□□ 1.04
HLA-DOAP06340 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
HLA-DOAP06340 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
HLA-DOAP06340 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HLA-DOAP06340 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
HLA-DOAP06340 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC21.55■■□□□ 1.04
HLA-DOAP06340 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
HLA-DOAP06340 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
HLA-DOAP06340 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC21.55■■□□□ 1.04
HLA-DOAP06340 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
HLA-DOAP06340 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HLA-DOAP06340 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HLA-DOAP06340 KRT8P10-201ENST00000450021 1447 ntBASIC21.55■■□□□ 1.04
HLA-DOAP06340 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
HLA-DOAP06340 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HLA-DOAP06340 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC21.54■■□□□ 1.04
HLA-DOAP06340 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
HLA-DOAP06340 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HLA-DOAP06340 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC21.54■■□□□ 1.04
HLA-DOAP06340 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC21.54■■□□□ 1.04
HLA-DOAP06340 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
HLA-DOAP06340 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
HLA-DOAP06340 POM121L3P-201ENST00000419331 1163 ntBASIC21.54■■□□□ 1.04
HLA-DOAP06340 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC21.54■■□□□ 1.04
HLA-DOAP06340 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
HLA-DOAP06340 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC21.54■■□□□ 1.04
HLA-DOAP06340 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC21.54■■□□□ 1.04
HLA-DOAP06340 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC21.54■■□□□ 1.04
HLA-DOAP06340 AL031008.1-201ENST00000619963 541 ntBASIC21.54■■□□□ 1.04
HLA-DOAP06340 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC21.54■■□□□ 1.04
HLA-DOAP06340 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
HLA-DOAP06340 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC21.54■■□□□ 1.04
HLA-DOAP06340 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC21.54■■□□□ 1.04
HLA-DOAP06340 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC21.54■■□□□ 1.04
HLA-DOAP06340 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HLA-DOAP06340 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HLA-DOAP06340 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
HLA-DOAP06340 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC21.53■■□□□ 1.04
HLA-DOAP06340 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
HLA-DOAP06340 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC21.53■■□□□ 1.04
HLA-DOAP06340 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC21.53■■□□□ 1.04
HLA-DOAP06340 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
HLA-DOAP06340 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC21.53■■□□□ 1.04
HLA-DOAP06340 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
HLA-DOAP06340 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC21.53■■□□□ 1.04
HLA-DOAP06340 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HLA-DOAP06340 BMF-207ENST00000559701 630 ntTSL 3 BASIC21.53■■□□□ 1.04
HLA-DOAP06340 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
HLA-DOAP06340 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC21.53■■□□□ 1.04
HLA-DOAP06340 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
HLA-DOAP06340 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HLA-DOAP06340 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
HLA-DOAP06340 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HLA-DOAP06340 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HLA-DOAP06340 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HLA-DOAP06340 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
HLA-DOAP06340 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC21.52■■□□□ 1.04
HLA-DOAP06340 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HLA-DOAP06340 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
HLA-DOAP06340 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HLA-DOAP06340 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
HLA-DOAP06340 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HLA-DOAP06340 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC21.52■■□□□ 1.04
HLA-DOAP06340 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC21.52■■□□□ 1.04
HLA-DOAP06340 FDX1P1-201ENST00000449115 551 ntBASIC21.52■■□□□ 1.04
HLA-DOAP06340 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC21.52■■□□□ 1.04
HLA-DOAP06340 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HLA-DOAP06340 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC21.52■■□□□ 1.04
HLA-DOAP06340 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HLA-DOAP06340 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC21.52■■□□□ 1.04
HLA-DOAP06340 AC009154.2-201ENST00000621177 724 ntBASIC21.52■■□□□ 1.04
HLA-DOAP06340 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
HLA-DOAP06340 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
HLA-DOAP06340 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
HLA-DOAP06340 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
HLA-DOAP06340 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
HLA-DOAP06340 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC21.52■■□□□ 1.03
HLA-DOAP06340 LINC01126-201ENST00000623515 1646 ntBASIC21.51■■□□□ 1.03
HLA-DOAP06340 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms