Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
APOEP02649 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC19.2■□□□□ 0.66
APOEP02649 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
APOEP02649 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC19.2■□□□□ 0.66
APOEP02649 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC19.2■□□□□ 0.66
APOEP02649 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC19.2■□□□□ 0.66
APOEP02649 GUK1-204ENST00000366721 689 ntTSL 3 BASIC19.2■□□□□ 0.66
APOEP02649 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC19.2■□□□□ 0.66
APOEP02649 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC19.2■□□□□ 0.66
APOEP02649 KRT18P38-201ENST00000449496 1282 ntBASIC19.2■□□□□ 0.66
APOEP02649 KRT18P35-201ENST00000510488 1269 ntBASIC19.2■□□□□ 0.66
APOEP02649 AC087388.1-201ENST00000571370 1112 ntBASIC19.2■□□□□ 0.66
APOEP02649 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
APOEP02649 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC19.2■□□□□ 0.66
APOEP02649 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
APOEP02649 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
APOEP02649 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
APOEP02649 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
APOEP02649 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
APOEP02649 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
APOEP02649 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
APOEP02649 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
APOEP02649 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC19.2■□□□□ 0.66
APOEP02649 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
APOEP02649 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
APOEP02649 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
APOEP02649 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
APOEP02649 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
APOEP02649 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC19.19■□□□□ 0.66
APOEP02649 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
APOEP02649 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
APOEP02649 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
APOEP02649 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
APOEP02649 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
APOEP02649 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
APOEP02649 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
APOEP02649 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
APOEP02649 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC19.19■□□□□ 0.66
APOEP02649 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
APOEP02649 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
APOEP02649 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC19.19■□□□□ 0.66
APOEP02649 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
APOEP02649 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
APOEP02649 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
APOEP02649 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
APOEP02649 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC19.19■□□□□ 0.66
APOEP02649 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC19.19■□□□□ 0.66
APOEP02649 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC19.19■□□□□ 0.66
APOEP02649 AL445228.2-201ENST00000605589 952 ntBASIC19.19■□□□□ 0.66
APOEP02649 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC19.19■□□□□ 0.66
APOEP02649 AL157888.1-201ENST00000631930 593 ntBASIC19.19■□□□□ 0.66
APOEP02649 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC19.19■□□□□ 0.66
APOEP02649 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC19.19■□□□□ 0.66
APOEP02649 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
APOEP02649 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
APOEP02649 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
APOEP02649 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
APOEP02649 AL390961.4-201ENST00000623958 2535 ntBASIC19.19■□□□□ 0.66
APOEP02649 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC19.19■□□□□ 0.66
APOEP02649 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
APOEP02649 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
APOEP02649 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
APOEP02649 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
APOEP02649 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
APOEP02649 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
APOEP02649 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
APOEP02649 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
APOEP02649 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
APOEP02649 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
APOEP02649 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
APOEP02649 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
APOEP02649 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
APOEP02649 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
APOEP02649 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC19.18■□□□□ 0.66
APOEP02649 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
APOEP02649 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
APOEP02649 ARMC10P1-201ENST00000313754 855 ntBASIC19.18■□□□□ 0.66
APOEP02649 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
APOEP02649 AC112907.2-201ENST00000448639 330 ntBASIC19.18■□□□□ 0.66
APOEP02649 AL671277.2-201ENST00000458060 996 ntBASIC19.18■□□□□ 0.66
APOEP02649 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
APOEP02649 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
APOEP02649 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
APOEP02649 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
APOEP02649 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
APOEP02649 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
APOEP02649 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
APOEP02649 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
APOEP02649 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
APOEP02649 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
APOEP02649 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC19.17■□□□□ 0.66
APOEP02649 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC19.17■□□□□ 0.66
APOEP02649 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
APOEP02649 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
APOEP02649 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
APOEP02649 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
APOEP02649 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC19.17■□□□□ 0.66
APOEP02649 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
APOEP02649 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
APOEP02649 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms