Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AC004980.1-204ENST00000429707 299 ntBASIC17.99■□□□□ 0.47
VPS4BO75351 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VPS4BO75351 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VPS4BO75351 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC17.99■□□□□ 0.47
VPS4BO75351 METTL23-204ENST00000586752 904 ntTSL 2 BASIC17.99■□□□□ 0.47
VPS4BO75351 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
VPS4BO75351 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
VPS4BO75351 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.99■□□□□ 0.47
VPS4BO75351 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VPS4BO75351 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.99■□□□□ 0.47
VPS4BO75351 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.99■□□□□ 0.47
VPS4BO75351 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VPS4BO75351 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VPS4BO75351 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
VPS4BO75351 AC020916.1-201ENST00000587762 1774 ntBASIC17.99■□□□□ 0.47
VPS4BO75351 AC093677.2-201ENST00000600169 1863 ntBASIC17.99■□□□□ 0.47
VPS4BO75351 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VPS4BO75351 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS4BO75351 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.98■□□□□ 0.47
VPS4BO75351 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VPS4BO75351 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS4BO75351 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.98■□□□□ 0.47
VPS4BO75351 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VPS4BO75351 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS4BO75351 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS4BO75351 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS4BO75351 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
VPS4BO75351 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
VPS4BO75351 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS4BO75351 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VPS4BO75351 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS4BO75351 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS4BO75351 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS4BO75351 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS4BO75351 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS4BO75351 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VPS4BO75351 AC128688.1-201ENST00000487626 519 ntBASIC17.98■□□□□ 0.47
VPS4BO75351 KRT18P41-201ENST00000518924 1277 ntBASIC17.98■□□□□ 0.47
VPS4BO75351 AC006011.2-201ENST00000621313 1158 ntBASIC17.98■□□□□ 0.47
VPS4BO75351 AL358472.4-201ENST00000633140 710 ntBASIC17.98■□□□□ 0.47
VPS4BO75351 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS4BO75351 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VPS4BO75351 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VPS4BO75351 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VPS4BO75351 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.98■□□□□ 0.47
VPS4BO75351 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VPS4BO75351 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS4BO75351 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS4BO75351 AC008556.1-201ENST00000610908 2040 ntBASIC17.98■□□□□ 0.47
VPS4BO75351 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC17.98■□□□□ 0.47
VPS4BO75351 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17.98■□□□□ 0.47
VPS4BO75351 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VPS4BO75351 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS4BO75351 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS4BO75351 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC17.97■□□□□ 0.47
VPS4BO75351 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.97■□□□□ 0.47
VPS4BO75351 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.97■□□□□ 0.47
VPS4BO75351 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.97■□□□□ 0.47
VPS4BO75351 MYLKP1-201ENST00000509077 1580 ntBASIC17.97■□□□□ 0.47
VPS4BO75351 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VPS4BO75351 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VPS4BO75351 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC17.97■□□□□ 0.47
VPS4BO75351 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VPS4BO75351 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC17.97■□□□□ 0.47
VPS4BO75351 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
VPS4BO75351 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC17.97■□□□□ 0.47
VPS4BO75351 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC17.97■□□□□ 0.47
VPS4BO75351 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VPS4BO75351 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
VPS4BO75351 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC17.97■□□□□ 0.47
VPS4BO75351 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC17.97■□□□□ 0.47
VPS4BO75351 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC17.97■□□□□ 0.47
VPS4BO75351 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
VPS4BO75351 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC17.97■□□□□ 0.47
VPS4BO75351 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
VPS4BO75351 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC17.97■□□□□ 0.47
VPS4BO75351 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.97■□□□□ 0.47
VPS4BO75351 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
VPS4BO75351 RCC2P3-201ENST00000418112 1537 ntBASIC17.97■□□□□ 0.47
VPS4BO75351 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VPS4BO75351 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VPS4BO75351 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VPS4BO75351 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS4BO75351 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS4BO75351 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC17.96■□□□□ 0.47
VPS4BO75351 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS4BO75351 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
VPS4BO75351 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
VPS4BO75351 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS4BO75351 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS4BO75351 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS4BO75351 COPE-203ENST00000351079 907 ntTSL 2 BASIC17.96■□□□□ 0.47
VPS4BO75351 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
VPS4BO75351 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC17.96■□□□□ 0.47
VPS4BO75351 AC004951.3-201ENST00000418645 1148 ntBASIC17.96■□□□□ 0.47
VPS4BO75351 BX664615.1-201ENST00000443558 458 ntBASIC17.96■□□□□ 0.47
VPS4BO75351 AC091390.4-202ENST00000476426 537 ntBASIC17.96■□□□□ 0.47
VPS4BO75351 KRT18P56-201ENST00000507275 550 ntBASIC17.96■□□□□ 0.47
VPS4BO75351 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
VPS4BO75351 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 71.6 ms