Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDX4O14627 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC17.6■□□□□ 0.41
CDX4O14627 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDX4O14627 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC17.6■□□□□ 0.41
CDX4O14627 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC17.6■□□□□ 0.41
CDX4O14627 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
CDX4O14627 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDX4O14627 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
CDX4O14627 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC17.59■□□□□ 0.41
CDX4O14627 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDX4O14627 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CDX4O14627 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDX4O14627 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC17.59■□□□□ 0.41
CDX4O14627 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDX4O14627 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC17.59■□□□□ 0.41
CDX4O14627 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC17.59■□□□□ 0.41
CDX4O14627 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDX4O14627 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC17.59■□□□□ 0.41
CDX4O14627 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
CDX4O14627 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC17.59■□□□□ 0.41
CDX4O14627 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
CDX4O14627 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CDX4O14627 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC17.59■□□□□ 0.41
CDX4O14627 YBX1P5-201ENST00000509441 847 ntBASIC17.59■□□□□ 0.41
CDX4O14627 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
CDX4O14627 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC17.59■□□□□ 0.41
CDX4O14627 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC17.59■□□□□ 0.41
CDX4O14627 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC17.59■□□□□ 0.41
CDX4O14627 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC17.59■□□□□ 0.41
CDX4O14627 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC17.59■□□□□ 0.41
CDX4O14627 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC17.59■□□□□ 0.41
CDX4O14627 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC17.59■□□□□ 0.41
CDX4O14627 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDX4O14627 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDX4O14627 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDX4O14627 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDX4O14627 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC17.59■□□□□ 0.41
CDX4O14627 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CDX4O14627 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDX4O14627 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC17.59■□□□□ 0.41
CDX4O14627 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC17.58■□□□□ 0.41
CDX4O14627 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
CDX4O14627 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.58■□□□□ 0.41
CDX4O14627 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
CDX4O14627 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CDX4O14627 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CDX4O14627 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC17.58■□□□□ 0.41
CDX4O14627 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
CDX4O14627 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CDX4O14627 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CDX4O14627 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CDX4O14627 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC17.58■□□□□ 0.4
CDX4O14627 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CDX4O14627 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CDX4O14627 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CDX4O14627 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC17.58■□□□□ 0.4
CDX4O14627 SRP19-202ENST00000445150 833 ntTSL 2 BASIC17.58■□□□□ 0.4
CDX4O14627 KRT18P2-201ENST00000447938 1258 ntBASIC17.58■□□□□ 0.4
CDX4O14627 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC17.58■□□□□ 0.4
CDX4O14627 CFL1-202ENST00000524553 860 ntTSL 2 BASIC17.58■□□□□ 0.4
CDX4O14627 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
CDX4O14627 SNHG9-202ENST00000564014 471 ntBASIC17.58■□□□□ 0.4
CDX4O14627 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC17.58■□□□□ 0.4
CDX4O14627 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC17.58■□□□□ 0.4
CDX4O14627 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CDX4O14627 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC17.58■□□□□ 0.4
CDX4O14627 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CDX4O14627 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CDX4O14627 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CDX4O14627 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CDX4O14627 SDHAP2-201ENST00000455183 2001 ntBASIC17.57■□□□□ 0.4
CDX4O14627 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CDX4O14627 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
CDX4O14627 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CDX4O14627 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CDX4O14627 PON3-203ENST00000427422 894 ntTSL 3 BASIC17.57■□□□□ 0.4
CDX4O14627 HTR5BP-201ENST00000430851 1154 ntBASIC17.57■□□□□ 0.4
CDX4O14627 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC17.57■□□□□ 0.4
CDX4O14627 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC17.57■□□□□ 0.4
CDX4O14627 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC17.57■□□□□ 0.4
CDX4O14627 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC17.57■□□□□ 0.4
CDX4O14627 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC17.57■□□□□ 0.4
CDX4O14627 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CDX4O14627 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CDX4O14627 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
CDX4O14627 LINC00602-201ENST00000629776 2065 ntBASIC17.57■□□□□ 0.4
CDX4O14627 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CDX4O14627 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
CDX4O14627 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
CDX4O14627 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CDX4O14627 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
CDX4O14627 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CDX4O14627 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CDX4O14627 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC17.56■□□□□ 0.4
CDX4O14627 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.56■□□□□ 0.4
CDX4O14627 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CDX4O14627 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC17.56■□□□□ 0.4
CDX4O14627 AC125437.2-201ENST00000625180 2167 ntBASIC17.56■□□□□ 0.4
CDX4O14627 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC17.56■□□□□ 0.4
CDX4O14627 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms