Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 AL513190.1-201ENST00000621254 727 ntBASIC16.45■□□□□ 0.22
COL6A6A6NMZ7 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC16.45■□□□□ 0.22
COL6A6A6NMZ7 Z92544.3-201ENST00000624747 417 ntBASIC16.45■□□□□ 0.22
COL6A6A6NMZ7 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC16.45■□□□□ 0.22
COL6A6A6NMZ7 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC16.45■□□□□ 0.22
COL6A6A6NMZ7 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL6A6A6NMZ7 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC16.45■□□□□ 0.22
COL6A6A6NMZ7 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL6A6A6NMZ7 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL6A6A6NMZ7 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL6A6A6NMZ7 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
COL6A6A6NMZ7 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC16.45■□□□□ 0.22
COL6A6A6NMZ7 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL6A6A6NMZ7 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL6A6A6NMZ7 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC16.44■□□□□ 0.22
COL6A6A6NMZ7 CD82-202ENST00000342935 967 ntTSL 5 BASIC16.44■□□□□ 0.22
COL6A6A6NMZ7 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
COL6A6A6NMZ7 AL139400.1-201ENST00000366220 510 ntBASIC16.44■□□□□ 0.22
COL6A6A6NMZ7 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
COL6A6A6NMZ7 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL6A6A6NMZ7 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC16.44■□□□□ 0.22
COL6A6A6NMZ7 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC16.44■□□□□ 0.22
COL6A6A6NMZ7 AP000344.2-201ENST00000512987 629 ntBASIC16.44■□□□□ 0.22
COL6A6A6NMZ7 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC16.44■□□□□ 0.22
COL6A6A6NMZ7 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC16.44■□□□□ 0.22
COL6A6A6NMZ7 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC16.44■□□□□ 0.22
COL6A6A6NMZ7 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC16.44■□□□□ 0.22
COL6A6A6NMZ7 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL6A6A6NMZ7 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL6A6A6NMZ7 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL6A6A6NMZ7 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL6A6A6NMZ7 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL6A6A6NMZ7 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL6A6A6NMZ7 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL6A6A6NMZ7 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC16.44■□□□□ 0.22
COL6A6A6NMZ7 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC16.44■□□□□ 0.22
COL6A6A6NMZ7 AC136632.2-201ENST00000512891 861 ntBASIC16.44■□□□□ 0.22
COL6A6A6NMZ7 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC16.44■□□□□ 0.22
COL6A6A6NMZ7 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC16.44■□□□□ 0.22
COL6A6A6NMZ7 GOLGA6L17P-202ENST00000614358 1398 ntBASIC16.44■□□□□ 0.22
COL6A6A6NMZ7 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC16.44■□□□□ 0.22
COL6A6A6NMZ7 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL6A6A6NMZ7 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL6A6A6NMZ7 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL6A6A6NMZ7 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC16.44■□□□□ 0.22
COL6A6A6NMZ7 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL6A6A6NMZ7 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL6A6A6NMZ7 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL6A6A6NMZ7 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL6A6A6NMZ7 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC16.43■□□□□ 0.22
COL6A6A6NMZ7 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL6A6A6NMZ7 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC16.43■□□□□ 0.22
COL6A6A6NMZ7 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC16.43■□□□□ 0.22
COL6A6A6NMZ7 DUX4L17-201ENST00000557360 1267 ntBASIC16.43■□□□□ 0.22
COL6A6A6NMZ7 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
COL6A6A6NMZ7 RNF151-202ENST00000569210 853 ntTSL 2 BASIC16.43■□□□□ 0.22
COL6A6A6NMZ7 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL6A6A6NMZ7 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL6A6A6NMZ7 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL6A6A6NMZ7 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC16.43■□□□□ 0.22
COL6A6A6NMZ7 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
COL6A6A6NMZ7 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL6A6A6NMZ7 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL6A6A6NMZ7 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL6A6A6NMZ7 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL6A6A6NMZ7 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL6A6A6NMZ7 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL6A6A6NMZ7 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC16.43■□□□□ 0.22
COL6A6A6NMZ7 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC16.43■□□□□ 0.22
COL6A6A6NMZ7 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC16.43■□□□□ 0.22
COL6A6A6NMZ7 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL6A6A6NMZ7 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
COL6A6A6NMZ7 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
COL6A6A6NMZ7 AL357033.4-201ENST00000617703 1807 ntBASIC16.43■□□□□ 0.22
COL6A6A6NMZ7 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 AC063926.2-201ENST00000623766 1308 ntBASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 HLA-V-201ENST00000429037 534 ntBASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 HCG4B-203ENST00000450128 991 ntBASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 PAWRP1-201ENST00000451083 565 ntBASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 AC006557.2-201ENST00000592985 1240 ntBASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 LBX2-AS1-202ENST00000603175 2083 ntBASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL6A6A6NMZ7 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms