Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC19.76■□□□□ 0.75
LRRC53A6NM62 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LRRC53A6NM62 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC19.76■□□□□ 0.75
LRRC53A6NM62 EML3-212ENST00000494176 2901 ntTSL 2 BASIC19.76■□□□□ 0.75
LRRC53A6NM62 EML3-216ENST00000529309 2909 ntTSL 2 BASIC19.76■□□□□ 0.75
LRRC53A6NM62 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC19.76■□□□□ 0.75
LRRC53A6NM62 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
LRRC53A6NM62 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
LRRC53A6NM62 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LRRC53A6NM62 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
LRRC53A6NM62 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LRRC53A6NM62 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC19.76■□□□□ 0.75
LRRC53A6NM62 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC19.76■□□□□ 0.75
LRRC53A6NM62 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC19.76■□□□□ 0.75
LRRC53A6NM62 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC19.76■□□□□ 0.75
LRRC53A6NM62 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LRRC53A6NM62 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC19.76■□□□□ 0.75
LRRC53A6NM62 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC19.76■□□□□ 0.75
LRRC53A6NM62 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC19.76■□□□□ 0.75
LRRC53A6NM62 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC19.76■□□□□ 0.75
LRRC53A6NM62 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC19.76■□□□□ 0.75
LRRC53A6NM62 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LRRC53A6NM62 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
LRRC53A6NM62 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
LRRC53A6NM62 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LRRC53A6NM62 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LRRC53A6NM62 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LRRC53A6NM62 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC19.75■□□□□ 0.75
LRRC53A6NM62 HLA-DQB1-201ENST00000374943 1656 ntBASIC19.75■□□□□ 0.75
LRRC53A6NM62 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
LRRC53A6NM62 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LRRC53A6NM62 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LRRC53A6NM62 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LRRC53A6NM62 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
LRRC53A6NM62 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
LRRC53A6NM62 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
LRRC53A6NM62 SP100-208ENST00000427101 1922 ntTSL 2 BASIC19.75■□□□□ 0.75
LRRC53A6NM62 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LRRC53A6NM62 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LRRC53A6NM62 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
LRRC53A6NM62 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC19.75■□□□□ 0.75
LRRC53A6NM62 KRT18P23-201ENST00000435622 1283 ntBASIC19.75■□□□□ 0.75
LRRC53A6NM62 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC19.75■□□□□ 0.75
LRRC53A6NM62 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC19.75■□□□□ 0.75
LRRC53A6NM62 CR769767.2-201ENST00000622735 460 ntBASIC19.75■□□□□ 0.75
LRRC53A6NM62 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
LRRC53A6NM62 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LRRC53A6NM62 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
LRRC53A6NM62 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC19.75■□□□□ 0.75
LRRC53A6NM62 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LRRC53A6NM62 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LRRC53A6NM62 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
LRRC53A6NM62 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC19.75■□□□□ 0.75
LRRC53A6NM62 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LRRC53A6NM62 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LRRC53A6NM62 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LRRC53A6NM62 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
LRRC53A6NM62 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LRRC53A6NM62 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LRRC53A6NM62 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC19.74■□□□□ 0.75
LRRC53A6NM62 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LRRC53A6NM62 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LRRC53A6NM62 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LRRC53A6NM62 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LRRC53A6NM62 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LRRC53A6NM62 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC19.74■□□□□ 0.75
LRRC53A6NM62 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LRRC53A6NM62 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC19.74■□□□□ 0.75
LRRC53A6NM62 RBM17P1-201ENST00000453646 1190 ntBASIC19.74■□□□□ 0.75
LRRC53A6NM62 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC19.74■□□□□ 0.75
LRRC53A6NM62 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC19.74■□□□□ 0.75
LRRC53A6NM62 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC19.74■□□□□ 0.75
LRRC53A6NM62 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC19.74■□□□□ 0.75
LRRC53A6NM62 USP36-216ENST00000589424 970 ntTSL 5 BASIC19.74■□□□□ 0.75
LRRC53A6NM62 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LRRC53A6NM62 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC19.74■□□□□ 0.75
LRRC53A6NM62 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC19.74■□□□□ 0.75
LRRC53A6NM62 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LRRC53A6NM62 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
LRRC53A6NM62 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LRRC53A6NM62 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LRRC53A6NM62 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC19.74■□□□□ 0.75
LRRC53A6NM62 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
LRRC53A6NM62 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
LRRC53A6NM62 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LRRC53A6NM62 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
LRRC53A6NM62 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC19.74■□□□□ 0.75
LRRC53A6NM62 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LRRC53A6NM62 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LRRC53A6NM62 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LRRC53A6NM62 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
LRRC53A6NM62 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
LRRC53A6NM62 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LRRC53A6NM62 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LRRC53A6NM62 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
LRRC53A6NM62 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC19.73■□□□□ 0.75
LRRC53A6NM62 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LRRC53A6NM62 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LRRC53A6NM62 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC19.73■□□□□ 0.75
LRRC53A6NM62 AL353719.1-201ENST00000566847 864 ntBASIC19.73■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms