Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC34.75■■■■□ 3.15
SHROOM4Q9ULL8 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC34.75■■■■□ 3.15
SHROOM4Q9ULL8 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC34.75■■■■□ 3.15
SHROOM4Q9ULL8 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC34.75■■■■□ 3.15
SHROOM4Q9ULL8 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC34.75■■■■□ 3.15
SHROOM4Q9ULL8 AL499627.1-201ENST00000569373 2188 ntBASIC34.75■■■■□ 3.15
SHROOM4Q9ULL8 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC34.75■■■■□ 3.15
SHROOM4Q9ULL8 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC34.75■■■■□ 3.15
SHROOM4Q9ULL8 MINOS1P3-201ENST00000457048 203 ntBASIC34.75■■■■□ 3.15
SHROOM4Q9ULL8 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC34.75■■■■□ 3.15
SHROOM4Q9ULL8 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC34.75■■■■□ 3.15
SHROOM4Q9ULL8 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC34.75■■■■□ 3.15
SHROOM4Q9ULL8 SNAI3-AS1-205ENST00000568633 2096 ntBASIC34.75■■■■□ 3.15
SHROOM4Q9ULL8 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC34.75■■■■□ 3.15
SHROOM4Q9ULL8 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC34.74■■■■□ 3.15
SHROOM4Q9ULL8 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC34.74■■■■□ 3.15
SHROOM4Q9ULL8 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC34.74■■■■□ 3.15
SHROOM4Q9ULL8 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC34.74■■■■□ 3.15
SHROOM4Q9ULL8 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC34.74■■■■□ 3.15
SHROOM4Q9ULL8 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC34.74■■■■□ 3.15
SHROOM4Q9ULL8 HNRNPDP1-201ENST00000439535 754 ntBASIC34.74■■■■□ 3.15
SHROOM4Q9ULL8 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC34.74■■■■□ 3.15
SHROOM4Q9ULL8 AC096582.2-201ENST00000510860 516 ntBASIC34.74■■■■□ 3.15
SHROOM4Q9ULL8 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC34.74■■■■□ 3.15
SHROOM4Q9ULL8 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC34.74■■■■□ 3.15
SHROOM4Q9ULL8 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC34.74■■■■□ 3.15
SHROOM4Q9ULL8 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC34.74■■■■□ 3.15
SHROOM4Q9ULL8 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC34.74■■■■□ 3.15
SHROOM4Q9ULL8 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC34.73■■■■□ 3.15
SHROOM4Q9ULL8 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC34.73■■■■□ 3.15
SHROOM4Q9ULL8 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC34.73■■■■□ 3.15
SHROOM4Q9ULL8 CSF3-203ENST00000394148 622 ntTSL 3 BASIC34.73■■■■□ 3.15
SHROOM4Q9ULL8 AP006288.1-201ENST00000446065 395 ntBASIC34.73■■■■□ 3.15
SHROOM4Q9ULL8 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC34.73■■■■□ 3.15
SHROOM4Q9ULL8 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC34.73■■■■□ 3.15
SHROOM4Q9ULL8 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC34.73■■■■□ 3.15
SHROOM4Q9ULL8 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC34.73■■■■□ 3.15
SHROOM4Q9ULL8 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC34.73■■■■□ 3.15
SHROOM4Q9ULL8 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC34.73■■■■□ 3.15
SHROOM4Q9ULL8 MIR3197-201ENST00000582241 73 ntBASIC34.72■■■■□ 3.15
SHROOM4Q9ULL8 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC34.72■■■■□ 3.15
SHROOM4Q9ULL8 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC34.72■■■■□ 3.15
SHROOM4Q9ULL8 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC34.72■■■■□ 3.15
SHROOM4Q9ULL8 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC34.72■■■■□ 3.15
SHROOM4Q9ULL8 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC34.72■■■■□ 3.15
SHROOM4Q9ULL8 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC34.71■■■■□ 3.15
SHROOM4Q9ULL8 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC34.71■■■■□ 3.15
SHROOM4Q9ULL8 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC34.71■■■■□ 3.15
SHROOM4Q9ULL8 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC34.71■■■■□ 3.15
SHROOM4Q9ULL8 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC34.71■■■■□ 3.15
SHROOM4Q9ULL8 AL591684.3-201ENST00000605187 298 ntBASIC34.71■■■■□ 3.15
SHROOM4Q9ULL8 AC116407.3-201ENST00000623905 1129 ntBASIC34.71■■■■□ 3.15
SHROOM4Q9ULL8 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC34.71■■■■□ 3.15
SHROOM4Q9ULL8 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC34.71■■■■□ 3.15
SHROOM4Q9ULL8 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC34.71■■■■□ 3.15
SHROOM4Q9ULL8 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC34.71■■■■□ 3.15
SHROOM4Q9ULL8 UROS-202ENST00000368778 1556 ntTSL 2 BASIC34.71■■■■□ 3.15
SHROOM4Q9ULL8 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC34.71■■■■□ 3.15
SHROOM4Q9ULL8 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC34.71■■■■□ 3.15
SHROOM4Q9ULL8 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC34.71■■■■□ 3.15
SHROOM4Q9ULL8 FIS1-203ENST00000442303 631 ntTSL 3 BASIC34.71■■■■□ 3.15
SHROOM4Q9ULL8 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC34.71■■■■□ 3.15
SHROOM4Q9ULL8 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC34.71■■■■□ 3.15
SHROOM4Q9ULL8 REEP1-209ENST00000541910 969 ntTSL 2 BASIC34.71■■■■□ 3.15
SHROOM4Q9ULL8 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC34.71■■■■□ 3.15
SHROOM4Q9ULL8 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC34.71■■■■□ 3.15
SHROOM4Q9ULL8 AL356488.2-201ENST00000602755 427 ntBASIC34.71■■■■□ 3.15
SHROOM4Q9ULL8 AC024563.2-201ENST00000603282 481 ntBASIC34.71■■■■□ 3.15
SHROOM4Q9ULL8 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC34.7■■■■□ 3.15
SHROOM4Q9ULL8 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC34.7■■■■□ 3.15
SHROOM4Q9ULL8 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC34.7■■■■□ 3.15
SHROOM4Q9ULL8 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC34.7■■■■□ 3.15
SHROOM4Q9ULL8 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC34.7■■■■□ 3.15
SHROOM4Q9ULL8 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC34.7■■■■□ 3.15
SHROOM4Q9ULL8 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC34.7■■■■□ 3.15
SHROOM4Q9ULL8 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC34.7■■■■□ 3.15
SHROOM4Q9ULL8 CFL1-212ENST00000531413 636 ntTSL 3 BASIC34.7■■■■□ 3.15
SHROOM4Q9ULL8 AC040169.1-201ENST00000565382 521 ntBASIC34.7■■■■□ 3.15
SHROOM4Q9ULL8 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC34.7■■■■□ 3.15
SHROOM4Q9ULL8 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC34.7■■■■□ 3.15
SHROOM4Q9ULL8 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC34.7■■■■□ 3.14
SHROOM4Q9ULL8 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC34.7■■■■□ 3.14
SHROOM4Q9ULL8 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC34.69■■■■□ 3.14
SHROOM4Q9ULL8 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC34.69■■■■□ 3.14
SHROOM4Q9ULL8 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC34.69■■■■□ 3.14
SHROOM4Q9ULL8 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC34.69■■■■□ 3.14
SHROOM4Q9ULL8 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC34.69■■■■□ 3.14
SHROOM4Q9ULL8 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC34.69■■■■□ 3.14
SHROOM4Q9ULL8 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC34.69■■■■□ 3.14
SHROOM4Q9ULL8 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC34.69■■■■□ 3.14
SHROOM4Q9ULL8 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC34.69■■■■□ 3.14
SHROOM4Q9ULL8 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC34.69■■■■□ 3.14
SHROOM4Q9ULL8 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC34.69■■■■□ 3.14
SHROOM4Q9ULL8 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC34.69■■■■□ 3.14
SHROOM4Q9ULL8 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC34.69■■■■□ 3.14
SHROOM4Q9ULL8 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC34.69■■■■□ 3.14
SHROOM4Q9ULL8 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC34.69■■■■□ 3.14
SHROOM4Q9ULL8 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC34.68■■■■□ 3.14
SHROOM4Q9ULL8 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC34.68■■■■□ 3.14
SHROOM4Q9ULL8 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC34.68■■■■□ 3.14
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms