Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TREX1Q9NSU2 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TREX1Q9NSU2 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TREX1Q9NSU2 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TREX1Q9NSU2 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TREX1Q9NSU2 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC18.3■□□□□ 0.52
TREX1Q9NSU2 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC18.3■□□□□ 0.52
TREX1Q9NSU2 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
TREX1Q9NSU2 AC067852.2-201ENST00000590513 2313 ntBASIC18.29■□□□□ 0.52
TREX1Q9NSU2 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TREX1Q9NSU2 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
TREX1Q9NSU2 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
TREX1Q9NSU2 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.29■□□□□ 0.52
TREX1Q9NSU2 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TREX1Q9NSU2 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TREX1Q9NSU2 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TREX1Q9NSU2 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC18.29■□□□□ 0.52
TREX1Q9NSU2 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC18.29■□□□□ 0.52
TREX1Q9NSU2 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
TREX1Q9NSU2 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.29■□□□□ 0.52
TREX1Q9NSU2 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC18.29■□□□□ 0.52
TREX1Q9NSU2 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TREX1Q9NSU2 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
TREX1Q9NSU2 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
TREX1Q9NSU2 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC18.29■□□□□ 0.52
TREX1Q9NSU2 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
TREX1Q9NSU2 REEP1-209ENST00000541910 969 ntTSL 2 BASIC18.29■□□□□ 0.52
TREX1Q9NSU2 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC18.29■□□□□ 0.52
TREX1Q9NSU2 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
TREX1Q9NSU2 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC18.29■□□□□ 0.52
TREX1Q9NSU2 AC141257.4-201ENST00000634557 245 ntBASIC18.29■□□□□ 0.52
TREX1Q9NSU2 AC136944.6-201ENST00000634818 245 ntBASIC18.29■□□□□ 0.52
TREX1Q9NSU2 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
TREX1Q9NSU2 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC18.29■□□□□ 0.52
TREX1Q9NSU2 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TREX1Q9NSU2 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TREX1Q9NSU2 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TREX1Q9NSU2 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TREX1Q9NSU2 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TREX1Q9NSU2 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TREX1Q9NSU2 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TREX1Q9NSU2 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TREX1Q9NSU2 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TREX1Q9NSU2 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC18.28■□□□□ 0.52
TREX1Q9NSU2 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TREX1Q9NSU2 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
TREX1Q9NSU2 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC18.28■□□□□ 0.52
TREX1Q9NSU2 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC18.28■□□□□ 0.52
TREX1Q9NSU2 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TREX1Q9NSU2 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
TREX1Q9NSU2 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TREX1Q9NSU2 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TREX1Q9NSU2 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
TREX1Q9NSU2 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TREX1Q9NSU2 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC18.28■□□□□ 0.52
TREX1Q9NSU2 GXYLT1P3-201ENST00000453058 1193 ntBASIC18.28■□□□□ 0.52
TREX1Q9NSU2 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TREX1Q9NSU2 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TREX1Q9NSU2 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC18.28■□□□□ 0.52
TREX1Q9NSU2 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TREX1Q9NSU2 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TREX1Q9NSU2 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TREX1Q9NSU2 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TREX1Q9NSU2 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC18.28■□□□□ 0.52
TREX1Q9NSU2 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TREX1Q9NSU2 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TREX1Q9NSU2 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TREX1Q9NSU2 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC18.28■□□□□ 0.52
TREX1Q9NSU2 AP000997.3-201ENST00000623333 2250 ntBASIC18.28■□□□□ 0.52
TREX1Q9NSU2 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TREX1Q9NSU2 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC18.27■□□□□ 0.52
TREX1Q9NSU2 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC18.27■□□□□ 0.52
TREX1Q9NSU2 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
TREX1Q9NSU2 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TREX1Q9NSU2 STK4-201ENST00000372801 2038 ntTSL 2 BASIC18.27■□□□□ 0.52
TREX1Q9NSU2 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC18.27■□□□□ 0.52
TREX1Q9NSU2 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC18.27■□□□□ 0.52
TREX1Q9NSU2 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TREX1Q9NSU2 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TREX1Q9NSU2 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TREX1Q9NSU2 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC18.27■□□□□ 0.52
TREX1Q9NSU2 AP000523.1-201ENST00000398242 1049 ntBASIC18.27■□□□□ 0.52
TREX1Q9NSU2 KIRREL3-AS3-201ENST00000404882 831 ntBASIC18.27■□□□□ 0.52
TREX1Q9NSU2 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC18.27■□□□□ 0.52
TREX1Q9NSU2 SLC25A3P1-201ENST00000443844 931 ntBASIC18.27■□□□□ 0.52
TREX1Q9NSU2 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC18.27■□□□□ 0.52
TREX1Q9NSU2 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC18.27■□□□□ 0.52
TREX1Q9NSU2 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC18.27■□□□□ 0.52
TREX1Q9NSU2 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC18.27■□□□□ 0.52
TREX1Q9NSU2 AC012306.2-201ENST00000609350 630 ntBASIC18.27■□□□□ 0.52
TREX1Q9NSU2 AC092865.7-201ENST00000641832 219 ntBASIC18.27■□□□□ 0.52
TREX1Q9NSU2 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
TREX1Q9NSU2 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TREX1Q9NSU2 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
TREX1Q9NSU2 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC18.27■□□□□ 0.52
TREX1Q9NSU2 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
TREX1Q9NSU2 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
TREX1Q9NSU2 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC18.27■□□□□ 0.51
TREX1Q9NSU2 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC18.27■□□□□ 0.51
TREX1Q9NSU2 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 72.5 ms