Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CISHQ9NSE2 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC19.56■□□□□ 0.72
CISHQ9NSE2 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC19.56■□□□□ 0.72
CISHQ9NSE2 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC19.56■□□□□ 0.72
CISHQ9NSE2 AL136038.4-201ENST00000603606 1261 ntBASIC19.56■□□□□ 0.72
CISHQ9NSE2 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CISHQ9NSE2 HYMAI.1-201ENST00000620949 238 ntBASIC19.56■□□□□ 0.72
CISHQ9NSE2 DFFB-212ENST00000625756 649 ntTSL 5 BASIC19.56■□□□□ 0.72
CISHQ9NSE2 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC19.56■□□□□ 0.72
CISHQ9NSE2 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CISHQ9NSE2 AC135050.7-201ENST00000624508 2218 ntBASIC19.56■□□□□ 0.72
CISHQ9NSE2 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC19.56■□□□□ 0.72
CISHQ9NSE2 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
CISHQ9NSE2 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CISHQ9NSE2 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC19.56■□□□□ 0.72
CISHQ9NSE2 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC19.56■□□□□ 0.72
CISHQ9NSE2 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CISHQ9NSE2 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CISHQ9NSE2 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CISHQ9NSE2 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CISHQ9NSE2 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC19.55■□□□□ 0.72
CISHQ9NSE2 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC19.55■□□□□ 0.72
CISHQ9NSE2 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CISHQ9NSE2 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CISHQ9NSE2 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CISHQ9NSE2 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC19.55■□□□□ 0.72
CISHQ9NSE2 COPE-203ENST00000351079 907 ntTSL 2 BASIC19.55■□□□□ 0.72
CISHQ9NSE2 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CISHQ9NSE2 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC19.55■□□□□ 0.72
CISHQ9NSE2 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CISHQ9NSE2 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
CISHQ9NSE2 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC19.55■□□□□ 0.72
CISHQ9NSE2 HLA-F-220ENST00000434407 884 ntBASIC19.55■□□□□ 0.72
CISHQ9NSE2 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CISHQ9NSE2 LINC01238-205ENST00000567549 1107 ntBASIC19.55■□□□□ 0.72
CISHQ9NSE2 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
CISHQ9NSE2 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CISHQ9NSE2 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
CISHQ9NSE2 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CISHQ9NSE2 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CISHQ9NSE2 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC19.55■□□□□ 0.72
CISHQ9NSE2 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
CISHQ9NSE2 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CISHQ9NSE2 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC19.54■□□□□ 0.72
CISHQ9NSE2 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
CISHQ9NSE2 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CISHQ9NSE2 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC19.54■□□□□ 0.72
CISHQ9NSE2 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CISHQ9NSE2 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC19.54■□□□□ 0.72
CISHQ9NSE2 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CISHQ9NSE2 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
CISHQ9NSE2 FGF14-AS2-201ENST00000606448 1074 ntBASIC19.54■□□□□ 0.72
CISHQ9NSE2 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC19.54■□□□□ 0.72
CISHQ9NSE2 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC19.54■□□□□ 0.72
CISHQ9NSE2 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC19.54■□□□□ 0.72
CISHQ9NSE2 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CISHQ9NSE2 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CISHQ9NSE2 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
CISHQ9NSE2 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CISHQ9NSE2 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CISHQ9NSE2 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
CISHQ9NSE2 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
CISHQ9NSE2 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC19.54■□□□□ 0.72
CISHQ9NSE2 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CISHQ9NSE2 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CISHQ9NSE2 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CISHQ9NSE2 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CISHQ9NSE2 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CISHQ9NSE2 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
CISHQ9NSE2 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
CISHQ9NSE2 RNF165-205ENST00000588679 2904 ntBASIC19.53■□□□□ 0.72
CISHQ9NSE2 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
CISHQ9NSE2 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CISHQ9NSE2 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CISHQ9NSE2 PHGDH-209ENST00000641074 1780 ntBASIC19.53■□□□□ 0.72
CISHQ9NSE2 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CISHQ9NSE2 HBZP1-201ENST00000354915 429 ntBASIC19.53■□□□□ 0.72
CISHQ9NSE2 SAPCD2P2-201ENST00000431719 1174 ntBASIC19.53■□□□□ 0.72
CISHQ9NSE2 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CISHQ9NSE2 NME3-204ENST00000563498 920 ntTSL 2 BASIC19.53■□□□□ 0.72
CISHQ9NSE2 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC19.53■□□□□ 0.72
CISHQ9NSE2 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC19.53■□□□□ 0.72
CISHQ9NSE2 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC19.53■□□□□ 0.72
CISHQ9NSE2 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
CISHQ9NSE2 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CISHQ9NSE2 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CISHQ9NSE2 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CISHQ9NSE2 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC19.52■□□□□ 0.72
CISHQ9NSE2 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CISHQ9NSE2 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
CISHQ9NSE2 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
CISHQ9NSE2 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC19.52■□□□□ 0.72
CISHQ9NSE2 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC19.52■□□□□ 0.72
CISHQ9NSE2 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC19.52■□□□□ 0.72
CISHQ9NSE2 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
CISHQ9NSE2 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
CISHQ9NSE2 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CISHQ9NSE2 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC19.52■□□□□ 0.72
CISHQ9NSE2 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CISHQ9NSE2 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 68.9 ms