Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CCDC28BQ9BUN5 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
CCDC28BQ9BUN5 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CCDC28BQ9BUN5 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC17.87■□□□□ 0.45
CCDC28BQ9BUN5 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
CCDC28BQ9BUN5 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CCDC28BQ9BUN5 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CCDC28BQ9BUN5 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CCDC28BQ9BUN5 ENSA-205ENST00000361532 792 ntTSL 2 BASIC17.87■□□□□ 0.45
CCDC28BQ9BUN5 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC17.87■□□□□ 0.45
CCDC28BQ9BUN5 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC17.87■□□□□ 0.45
CCDC28BQ9BUN5 GLI3-203ENST00000437480 451 ntTSL 2 BASIC17.87■□□□□ 0.45
CCDC28BQ9BUN5 AC091390.4-202ENST00000476426 537 ntBASIC17.87■□□□□ 0.45
CCDC28BQ9BUN5 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC17.87■□□□□ 0.45
CCDC28BQ9BUN5 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CCDC28BQ9BUN5 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC17.87■□□□□ 0.45
CCDC28BQ9BUN5 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
CCDC28BQ9BUN5 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC17.87■□□□□ 0.45
CCDC28BQ9BUN5 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
CCDC28BQ9BUN5 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
CCDC28BQ9BUN5 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CCDC28BQ9BUN5 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC17.87■□□□□ 0.45
CCDC28BQ9BUN5 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
CCDC28BQ9BUN5 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
CCDC28BQ9BUN5 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CCDC28BQ9BUN5 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC17.87■□□□□ 0.45
CCDC28BQ9BUN5 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC28BQ9BUN5 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.86■□□□□ 0.45
CCDC28BQ9BUN5 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC17.86■□□□□ 0.45
CCDC28BQ9BUN5 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC28BQ9BUN5 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC28BQ9BUN5 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC28BQ9BUN5 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC28BQ9BUN5 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC28BQ9BUN5 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC28BQ9BUN5 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC28BQ9BUN5 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC28BQ9BUN5 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
CCDC28BQ9BUN5 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC28BQ9BUN5 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC17.86■□□□□ 0.45
CCDC28BQ9BUN5 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC17.86■□□□□ 0.45
CCDC28BQ9BUN5 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC28BQ9BUN5 PARL-206ENST00000435888 1098 ntTSL 5 BASIC17.86■□□□□ 0.45
CCDC28BQ9BUN5 AC069152.1-201ENST00000438030 544 ntBASIC17.86■□□□□ 0.45
CCDC28BQ9BUN5 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC17.86■□□□□ 0.45
CCDC28BQ9BUN5 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC17.86■□□□□ 0.45
CCDC28BQ9BUN5 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC17.86■□□□□ 0.45
CCDC28BQ9BUN5 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC17.86■□□□□ 0.45
CCDC28BQ9BUN5 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC17.86■□□□□ 0.45
CCDC28BQ9BUN5 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC17.86■□□□□ 0.45
CCDC28BQ9BUN5 AC008403.3-201ENST00000598924 454 ntBASIC17.86■□□□□ 0.45
CCDC28BQ9BUN5 GAMT-205ENST00000640762 751 ntTSL 5 BASIC17.86■□□□□ 0.45
CCDC28BQ9BUN5 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC28BQ9BUN5 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC17.86■□□□□ 0.45
CCDC28BQ9BUN5 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC17.86■□□□□ 0.45
CCDC28BQ9BUN5 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC28BQ9BUN5 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC28BQ9BUN5 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.86■□□□□ 0.45
CCDC28BQ9BUN5 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC17.86■□□□□ 0.45
CCDC28BQ9BUN5 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC17.86■□□□□ 0.45
CCDC28BQ9BUN5 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
CCDC28BQ9BUN5 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC28BQ9BUN5 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CCDC28BQ9BUN5 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC17.86■□□□□ 0.45
CCDC28BQ9BUN5 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
CCDC28BQ9BUN5 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC28BQ9BUN5 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC28BQ9BUN5 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC28BQ9BUN5 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
CCDC28BQ9BUN5 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.85■□□□□ 0.45
CCDC28BQ9BUN5 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
CCDC28BQ9BUN5 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC28BQ9BUN5 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC28BQ9BUN5 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.85■□□□□ 0.45
CCDC28BQ9BUN5 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC28BQ9BUN5 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC28BQ9BUN5 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC17.85■□□□□ 0.45
CCDC28BQ9BUN5 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC28BQ9BUN5 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC28BQ9BUN5 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
CCDC28BQ9BUN5 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
CCDC28BQ9BUN5 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC28BQ9BUN5 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
CCDC28BQ9BUN5 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC17.85■□□□□ 0.45
CCDC28BQ9BUN5 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
CCDC28BQ9BUN5 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC28BQ9BUN5 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC17.85■□□□□ 0.45
CCDC28BQ9BUN5 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC17.85■□□□□ 0.45
CCDC28BQ9BUN5 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC28BQ9BUN5 AC006116.8-202ENST00000587620 1550 ntBASIC17.85■□□□□ 0.45
CCDC28BQ9BUN5 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC17.85■□□□□ 0.45
CCDC28BQ9BUN5 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC28BQ9BUN5 PHGDH-209ENST00000641074 1780 ntBASIC17.85■□□□□ 0.45
CCDC28BQ9BUN5 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC28BQ9BUN5 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
CCDC28BQ9BUN5 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CCDC28BQ9BUN5 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC28BQ9BUN5 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC17.84■□□□□ 0.45
CCDC28BQ9BUN5 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC28BQ9BUN5 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms