Protein–RNA interactions for Protein: Q9BT23

LIMD2, LIM domain-containing protein 2, humanhuman

Predictions only

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD2Q9BT23 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC10.95□□□□□ -0.66
LIMD2Q9BT23 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
LIMD2Q9BT23 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC10.95□□□□□ -0.66
LIMD2Q9BT23 NOC2LP2-201ENST00000407594 1944 ntBASIC10.95□□□□□ -0.66
LIMD2Q9BT23 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
LIMD2Q9BT23 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
LIMD2Q9BT23 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
LIMD2Q9BT23 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
LIMD2Q9BT23 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC10.95□□□□□ -0.66
LIMD2Q9BT23 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC10.95□□□□□ -0.66
LIMD2Q9BT23 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC10.95□□□□□ -0.66
LIMD2Q9BT23 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
LIMD2Q9BT23 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
LIMD2Q9BT23 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 RPS15-203ENST00000586096 570 ntTSL 2 BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC10.94□□□□□ -0.66
LIMD2Q9BT23 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
LIMD2Q9BT23 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
LIMD2Q9BT23 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
LIMD2Q9BT23 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
LIMD2Q9BT23 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC10.93□□□□□ -0.66
LIMD2Q9BT23 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC10.93□□□□□ -0.66
LIMD2Q9BT23 AC046158.3-201ENST00000624947 2558 ntBASIC10.93□□□□□ -0.66
LIMD2Q9BT23 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC10.93□□□□□ -0.66
LIMD2Q9BT23 Z98044.1-201ENST00000632503 1764 ntBASIC10.93□□□□□ -0.66
LIMD2Q9BT23 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
LIMD2Q9BT23 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC10.93□□□□□ -0.66
LIMD2Q9BT23 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
LIMD2Q9BT23 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC10.93□□□□□ -0.66
LIMD2Q9BT23 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
LIMD2Q9BT23 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
LIMD2Q9BT23 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
LIMD2Q9BT23 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
LIMD2Q9BT23 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
LIMD2Q9BT23 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC10.93□□□□□ -0.66
LIMD2Q9BT23 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC10.93□□□□□ -0.66
LIMD2Q9BT23 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
LIMD2Q9BT23 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
LIMD2Q9BT23 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC10.93□□□□□ -0.66
LIMD2Q9BT23 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
LIMD2Q9BT23 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC10.93□□□□□ -0.66
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms