Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
TRIM56Q9BRZ2 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM56Q9BRZ2 ENSA-205ENST00000361532 792 ntTSL 2 BASIC18.74■□□□□ 0.59
TRIM56Q9BRZ2 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM56Q9BRZ2 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM56Q9BRZ2 AC233702.5-201ENST00000584107 538 ntBASIC18.74■□□□□ 0.59
TRIM56Q9BRZ2 AL049637.2-201ENST00000641778 930 ntBASIC18.74■□□□□ 0.59
TRIM56Q9BRZ2 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
TRIM56Q9BRZ2 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM56Q9BRZ2 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
TRIM56Q9BRZ2 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM56Q9BRZ2 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM56Q9BRZ2 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC18.74■□□□□ 0.59
TRIM56Q9BRZ2 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM56Q9BRZ2 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM56Q9BRZ2 MME-217ENST00000616757 1315 ntTSL 5 BASIC18.74■□□□□ 0.59
TRIM56Q9BRZ2 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 AC093677.2-201ENST00000600169 1863 ntBASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 BUB3-202ENST00000368859 667 ntTSL 3 BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 AC097488.1-201ENST00000507834 756 ntBASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 AC112777.1-201ENST00000540175 1423 ntBASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 AL135905.2-201ENST00000584934 1404 ntBASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRIM56Q9BRZ2 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRIM56Q9BRZ2 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
TRIM56Q9BRZ2 MYLKP1-201ENST00000509077 1580 ntBASIC18.72■□□□□ 0.59
TRIM56Q9BRZ2 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRIM56Q9BRZ2 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC18.72■□□□□ 0.59
TRIM56Q9BRZ2 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
TRIM56Q9BRZ2 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRIM56Q9BRZ2 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRIM56Q9BRZ2 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRIM56Q9BRZ2 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRIM56Q9BRZ2 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC18.72■□□□□ 0.59
TRIM56Q9BRZ2 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRIM56Q9BRZ2 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRIM56Q9BRZ2 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC18.72■□□□□ 0.59
TRIM56Q9BRZ2 PRR31-201ENST00000371629 978 ntTSL 2 BASIC18.72■□□□□ 0.59
TRIM56Q9BRZ2 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC18.72■□□□□ 0.59
TRIM56Q9BRZ2 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
TRIM56Q9BRZ2 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC18.72■□□□□ 0.59
TRIM56Q9BRZ2 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC18.72■□□□□ 0.59
TRIM56Q9BRZ2 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
TRIM56Q9BRZ2 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC18.72■□□□□ 0.59
TRIM56Q9BRZ2 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRIM56Q9BRZ2 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
TRIM56Q9BRZ2 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRIM56Q9BRZ2 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRIM56Q9BRZ2 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRIM56Q9BRZ2 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
TRIM56Q9BRZ2 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC18.72■□□□□ 0.59
TRIM56Q9BRZ2 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
TRIM56Q9BRZ2 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
TRIM56Q9BRZ2 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
TRIM56Q9BRZ2 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC18.71■□□□□ 0.59
TRIM56Q9BRZ2 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
TRIM56Q9BRZ2 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
TRIM56Q9BRZ2 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms