Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
CDX2Q99626 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
CDX2Q99626 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CDX2Q99626 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CDX2Q99626 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CDX2Q99626 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CDX2Q99626 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC19.09■□□□□ 0.65
CDX2Q99626 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CDX2Q99626 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
CDX2Q99626 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
CDX2Q99626 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC19.09■□□□□ 0.65
CDX2Q99626 CD9-202ENST00000382515 1229 ntTSL 5 BASIC19.09■□□□□ 0.65
CDX2Q99626 BAD-202ENST00000394531 631 ntTSL 3 BASIC19.09■□□□□ 0.65
CDX2Q99626 AC002472.2-201ENST00000442739 958 ntBASIC19.09■□□□□ 0.65
CDX2Q99626 AC108073.2-201ENST00000464002 357 ntBASIC19.09■□□□□ 0.65
CDX2Q99626 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC19.09■□□□□ 0.65
CDX2Q99626 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
CDX2Q99626 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC19.09■□□□□ 0.65
CDX2Q99626 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CDX2Q99626 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC19.09■□□□□ 0.65
CDX2Q99626 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC19.09■□□□□ 0.65
CDX2Q99626 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CDX2Q99626 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC19.09■□□□□ 0.65
CDX2Q99626 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CDX2Q99626 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CDX2Q99626 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CDX2Q99626 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CDX2Q99626 AC004817.3-201ENST00000602957 2129 ntBASIC19.09■□□□□ 0.65
CDX2Q99626 NARF-204ENST00000390006 1766 ntTSL 2 BASIC19.09■□□□□ 0.65
CDX2Q99626 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC19.09■□□□□ 0.65
CDX2Q99626 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
CDX2Q99626 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC19.08■□□□□ 0.65
CDX2Q99626 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
CDX2Q99626 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CDX2Q99626 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
CDX2Q99626 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CDX2Q99626 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC19.08■□□□□ 0.65
CDX2Q99626 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC19.08■□□□□ 0.65
CDX2Q99626 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.64
CDX2Q99626 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CDX2Q99626 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CDX2Q99626 DDT-204ENST00000404092 805 ntTSL 3 BASIC19.08■□□□□ 0.64
CDX2Q99626 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC19.08■□□□□ 0.64
CDX2Q99626 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC19.08■□□□□ 0.64
CDX2Q99626 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CDX2Q99626 DUX4L27-201ENST00000554796 1261 ntBASIC19.08■□□□□ 0.64
CDX2Q99626 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC19.08■□□□□ 0.64
CDX2Q99626 LINC00628-201ENST00000628516 1289 ntBASIC19.08■□□□□ 0.64
CDX2Q99626 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CDX2Q99626 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CDX2Q99626 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
CDX2Q99626 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
CDX2Q99626 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CDX2Q99626 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDX2Q99626 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDX2Q99626 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CDX2Q99626 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
CDX2Q99626 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDX2Q99626 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDX2Q99626 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDX2Q99626 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CDX2Q99626 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC19.07■□□□□ 0.64
CDX2Q99626 CBR1-202ENST00000399191 838 ntTSL 3 BASIC19.07■□□□□ 0.64
CDX2Q99626 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
CDX2Q99626 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC19.07■□□□□ 0.64
CDX2Q99626 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC19.07■□□□□ 0.64
CDX2Q99626 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDX2Q99626 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDX2Q99626 NMU-203ENST00000507338 658 ntTSL 3 BASIC19.07■□□□□ 0.64
CDX2Q99626 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC19.07■□□□□ 0.64
CDX2Q99626 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC19.07■□□□□ 0.64
CDX2Q99626 RN7SL204P-201ENST00000582831 262 ntBASIC19.07■□□□□ 0.64
CDX2Q99626 CECR7-204ENST00000609932 568 ntTSL 2 BASIC19.07■□□□□ 0.64
CDX2Q99626 MIR6752-201ENST00000618442 71 ntBASIC19.07■□□□□ 0.64
CDX2Q99626 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDX2Q99626 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDX2Q99626 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CDX2Q99626 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDX2Q99626 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDX2Q99626 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC19.07■□□□□ 0.64
CDX2Q99626 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC19.06■□□□□ 0.64
CDX2Q99626 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDX2Q99626 Z98044.1-201ENST00000632503 1764 ntBASIC19.06■□□□□ 0.64
CDX2Q99626 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDX2Q99626 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDX2Q99626 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDX2Q99626 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC19.06■□□□□ 0.64
CDX2Q99626 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC19.06■□□□□ 0.64
CDX2Q99626 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC19.06■□□□□ 0.64
CDX2Q99626 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC19.06■□□□□ 0.64
CDX2Q99626 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CDX2Q99626 YTHDF3-AS1-201ENST00000603538 718 ntBASIC19.06■□□□□ 0.64
CDX2Q99626 AC004877.2-201ENST00000623941 599 ntBASIC19.06■□□□□ 0.64
CDX2Q99626 AC105339.1-204ENST00000636249 355 ntBASIC19.06■□□□□ 0.64
CDX2Q99626 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDX2Q99626 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDX2Q99626 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CDX2Q99626 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
CDX2Q99626 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDX2Q99626 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC19.05■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms