Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 FP475955.4-201ENST00000623131 1990 ntBASIC17.58■□□□□ 0.4
VMP1Q96GC9 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
VMP1Q96GC9 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
VMP1Q96GC9 UBQLN4P1-201ENST00000461599 1801 ntBASIC17.58■□□□□ 0.4
VMP1Q96GC9 TBC1D3P2-202ENST00000577902 1649 ntBASIC17.58■□□□□ 0.4
VMP1Q96GC9 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
VMP1Q96GC9 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.57■□□□□ 0.4
VMP1Q96GC9 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
VMP1Q96GC9 LGALS8-AS1-201ENST00000487567 1457 ntBASIC17.57■□□□□ 0.4
VMP1Q96GC9 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VMP1Q96GC9 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
VMP1Q96GC9 AC073508.3-201ENST00000619697 1419 ntBASIC17.57■□□□□ 0.4
VMP1Q96GC9 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
VMP1Q96GC9 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC17.57■□□□□ 0.4
VMP1Q96GC9 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VMP1Q96GC9 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
VMP1Q96GC9 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
VMP1Q96GC9 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
VMP1Q96GC9 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
VMP1Q96GC9 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC17.57■□□□□ 0.4
VMP1Q96GC9 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC17.57■□□□□ 0.4
VMP1Q96GC9 KRT18P57-201ENST00000443599 1254 ntBASIC17.57■□□□□ 0.4
VMP1Q96GC9 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC17.57■□□□□ 0.4
VMP1Q96GC9 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VMP1Q96GC9 TK2-213ENST00000563369 882 ntTSL 5 BASIC17.57■□□□□ 0.4
VMP1Q96GC9 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
VMP1Q96GC9 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VMP1Q96GC9 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VMP1Q96GC9 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VMP1Q96GC9 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC17.57■□□□□ 0.4
VMP1Q96GC9 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
VMP1Q96GC9 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
VMP1Q96GC9 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VMP1Q96GC9 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
VMP1Q96GC9 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.57■□□□□ 0.4
VMP1Q96GC9 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VMP1Q96GC9 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VMP1Q96GC9 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC17.57■□□□□ 0.4
VMP1Q96GC9 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VMP1Q96GC9 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.56■□□□□ 0.4
VMP1Q96GC9 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VMP1Q96GC9 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC17.56■□□□□ 0.4
VMP1Q96GC9 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VMP1Q96GC9 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VMP1Q96GC9 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC17.56■□□□□ 0.4
VMP1Q96GC9 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
VMP1Q96GC9 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VMP1Q96GC9 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VMP1Q96GC9 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC17.56■□□□□ 0.4
VMP1Q96GC9 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VMP1Q96GC9 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC17.56■□□□□ 0.4
VMP1Q96GC9 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC17.56■□□□□ 0.4
VMP1Q96GC9 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC17.56■□□□□ 0.4
VMP1Q96GC9 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VMP1Q96GC9 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC17.56■□□□□ 0.4
VMP1Q96GC9 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC17.56■□□□□ 0.4
VMP1Q96GC9 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC17.56■□□□□ 0.4
VMP1Q96GC9 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC17.56■□□□□ 0.4
VMP1Q96GC9 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VMP1Q96GC9 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VMP1Q96GC9 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VMP1Q96GC9 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
VMP1Q96GC9 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
VMP1Q96GC9 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VMP1Q96GC9 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VMP1Q96GC9 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VMP1Q96GC9 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VMP1Q96GC9 KATNBL1P6-202ENST00000562413 1466 ntBASIC17.56■□□□□ 0.4
VMP1Q96GC9 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VMP1Q96GC9 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC17.56■□□□□ 0.4
VMP1Q96GC9 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VMP1Q96GC9 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VMP1Q96GC9 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC17.55■□□□□ 0.4
VMP1Q96GC9 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
VMP1Q96GC9 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VMP1Q96GC9 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VMP1Q96GC9 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
VMP1Q96GC9 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VMP1Q96GC9 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
VMP1Q96GC9 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.55■□□□□ 0.4
VMP1Q96GC9 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VMP1Q96GC9 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
VMP1Q96GC9 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC17.55■□□□□ 0.4
VMP1Q96GC9 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VMP1Q96GC9 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VMP1Q96GC9 OR6D1P-202ENST00000641007 5290 ntBASIC17.55■□□□□ 0.4
VMP1Q96GC9 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
VMP1Q96GC9 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VMP1Q96GC9 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VMP1Q96GC9 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC17.55■□□□□ 0.4
VMP1Q96GC9 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
VMP1Q96GC9 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
VMP1Q96GC9 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC17.55■□□□□ 0.4
VMP1Q96GC9 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
VMP1Q96GC9 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
VMP1Q96GC9 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
VMP1Q96GC9 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC17.55■□□□□ 0.4
VMP1Q96GC9 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC17.55■□□□□ 0.4
VMP1Q96GC9 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC17.55■□□□□ 0.4
VMP1Q96GC9 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 200.9 ms