Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC20.22■□□□□ 0.83
CCDC40Q4G0X9 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC40Q4G0X9 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC40Q4G0X9 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC40Q4G0X9 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC40Q4G0X9 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
CCDC40Q4G0X9 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC40Q4G0X9 ESPNP-201ENST00000270691 2015 ntBASIC20.21■□□□□ 0.83
CCDC40Q4G0X9 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC40Q4G0X9 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC20.21■□□□□ 0.83
CCDC40Q4G0X9 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC40Q4G0X9 BX088651.1-201ENST00000540551 451 ntBASIC20.21■□□□□ 0.83
CCDC40Q4G0X9 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC20.21■□□□□ 0.83
CCDC40Q4G0X9 MIR4497-201ENST00000583208 89 ntBASIC20.21■□□□□ 0.83
CCDC40Q4G0X9 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC20.21■□□□□ 0.83
CCDC40Q4G0X9 SNX21-213ENST00000614929 587 ntTSL 5 BASIC20.21■□□□□ 0.83
CCDC40Q4G0X9 CR769767.2-201ENST00000622735 460 ntBASIC20.21■□□□□ 0.83
CCDC40Q4G0X9 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC40Q4G0X9 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC40Q4G0X9 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC20.21■□□□□ 0.83
CCDC40Q4G0X9 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC40Q4G0X9 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC40Q4G0X9 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC40Q4G0X9 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC40Q4G0X9 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC40Q4G0X9 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC40Q4G0X9 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC20.2■□□□□ 0.82
CCDC40Q4G0X9 AC092338.2-201ENST00000568827 1415 ntBASIC20.2■□□□□ 0.82
CCDC40Q4G0X9 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC40Q4G0X9 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC40Q4G0X9 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC20.2■□□□□ 0.82
CCDC40Q4G0X9 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC20.2■□□□□ 0.82
CCDC40Q4G0X9 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC40Q4G0X9 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC20.2■□□□□ 0.82
CCDC40Q4G0X9 SNCG-201ENST00000348795 684 ntTSL 2 BASIC20.2■□□□□ 0.82
CCDC40Q4G0X9 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC40Q4G0X9 KRT18P23-201ENST00000435622 1283 ntBASIC20.2■□□□□ 0.82
CCDC40Q4G0X9 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC20.2■□□□□ 0.82
CCDC40Q4G0X9 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC20.2■□□□□ 0.82
CCDC40Q4G0X9 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC20.2■□□□□ 0.82
CCDC40Q4G0X9 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC40Q4G0X9 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC20.2■□□□□ 0.82
CCDC40Q4G0X9 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC20.2■□□□□ 0.82
CCDC40Q4G0X9 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC40Q4G0X9 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC40Q4G0X9 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC40Q4G0X9 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC40Q4G0X9 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC20.2■□□□□ 0.82
CCDC40Q4G0X9 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC40Q4G0X9 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC20.2■□□□□ 0.82
CCDC40Q4G0X9 AC093677.2-201ENST00000600169 1863 ntBASIC20.2■□□□□ 0.82
CCDC40Q4G0X9 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
CCDC40Q4G0X9 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC40Q4G0X9 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC40Q4G0X9 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC20.19■□□□□ 0.82
CCDC40Q4G0X9 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC40Q4G0X9 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC20.19■□□□□ 0.82
CCDC40Q4G0X9 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC40Q4G0X9 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC40Q4G0X9 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
CCDC40Q4G0X9 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC40Q4G0X9 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC20.19■□□□□ 0.82
CCDC40Q4G0X9 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC40Q4G0X9 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC40Q4G0X9 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC40Q4G0X9 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC40Q4G0X9 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC40Q4G0X9 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC40Q4G0X9 AL133373.2-201ENST00000623187 2828 ntBASIC20.19■□□□□ 0.82
CCDC40Q4G0X9 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC20.19■□□□□ 0.82
CCDC40Q4G0X9 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
CCDC40Q4G0X9 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC20.19■□□□□ 0.82
CCDC40Q4G0X9 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC40Q4G0X9 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC20.19■□□□□ 0.82
CCDC40Q4G0X9 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC20.18■□□□□ 0.82
CCDC40Q4G0X9 CYP51A1P1-201ENST00000492267 1507 ntBASIC20.18■□□□□ 0.82
CCDC40Q4G0X9 FLYWCH1P1-201ENST00000460917 1874 ntBASIC20.18■□□□□ 0.82
CCDC40Q4G0X9 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC20.18■□□□□ 0.82
CCDC40Q4G0X9 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC20.18■□□□□ 0.82
CCDC40Q4G0X9 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC20.18■□□□□ 0.82
CCDC40Q4G0X9 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC40Q4G0X9 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
CCDC40Q4G0X9 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC40Q4G0X9 AC007663.1-201ENST00000438948 1240 ntBASIC20.18■□□□□ 0.82
CCDC40Q4G0X9 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC20.18■□□□□ 0.82
CCDC40Q4G0X9 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC20.18■□□□□ 0.82
CCDC40Q4G0X9 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC20.18■□□□□ 0.82
CCDC40Q4G0X9 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC20.18■□□□□ 0.82
CCDC40Q4G0X9 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC40Q4G0X9 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC20.18■□□□□ 0.82
CCDC40Q4G0X9 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
CCDC40Q4G0X9 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC40Q4G0X9 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC40Q4G0X9 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC40Q4G0X9 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC20.18■□□□□ 0.82
CCDC40Q4G0X9 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC40Q4G0X9 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC40Q4G0X9 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC40Q4G0X9 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
CCDC40Q4G0X9 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms