Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC17.08■□□□□ 0.33
RFX4Q33E94 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC17.08■□□□□ 0.33
RFX4Q33E94 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RFX4Q33E94 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
RFX4Q33E94 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC17.08■□□□□ 0.32
RFX4Q33E94 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RFX4Q33E94 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC17.08■□□□□ 0.32
RFX4Q33E94 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RFX4Q33E94 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RFX4Q33E94 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RFX4Q33E94 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC17.08■□□□□ 0.32
RFX4Q33E94 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RFX4Q33E94 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC17.08■□□□□ 0.32
RFX4Q33E94 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RFX4Q33E94 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC17.08■□□□□ 0.32
RFX4Q33E94 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
RFX4Q33E94 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RFX4Q33E94 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
RFX4Q33E94 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RFX4Q33E94 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
RFX4Q33E94 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
RFX4Q33E94 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
RFX4Q33E94 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RFX4Q33E94 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RFX4Q33E94 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RFX4Q33E94 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RFX4Q33E94 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RFX4Q33E94 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RFX4Q33E94 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
RFX4Q33E94 AL357033.4-201ENST00000617703 1807 ntBASIC17.07■□□□□ 0.32
RFX4Q33E94 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RFX4Q33E94 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RFX4Q33E94 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RFX4Q33E94 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RFX4Q33E94 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RFX4Q33E94 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC17.07■□□□□ 0.32
RFX4Q33E94 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.07■□□□□ 0.32
RFX4Q33E94 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RFX4Q33E94 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.07■□□□□ 0.32
RFX4Q33E94 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RFX4Q33E94 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC17.07■□□□□ 0.32
RFX4Q33E94 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
RFX4Q33E94 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RFX4Q33E94 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.07■□□□□ 0.32
RFX4Q33E94 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RFX4Q33E94 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RFX4Q33E94 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.07■□□□□ 0.32
RFX4Q33E94 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.07■□□□□ 0.32
RFX4Q33E94 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC17.07■□□□□ 0.32
RFX4Q33E94 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RFX4Q33E94 AP003097.1-201ENST00000530657 1135 ntBASIC17.07■□□□□ 0.32
RFX4Q33E94 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
RFX4Q33E94 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC17.07■□□□□ 0.32
RFX4Q33E94 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
RFX4Q33E94 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
RFX4Q33E94 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
RFX4Q33E94 PCDHA12-202ENST00000613593 2588 ntBASIC17.07■□□□□ 0.32
RFX4Q33E94 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.07■□□□□ 0.32
RFX4Q33E94 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC17.07■□□□□ 0.32
RFX4Q33E94 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RFX4Q33E94 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC17.07■□□□□ 0.32
RFX4Q33E94 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RFX4Q33E94 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RFX4Q33E94 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RFX4Q33E94 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RFX4Q33E94 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.07■□□□□ 0.32
RFX4Q33E94 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
RFX4Q33E94 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC17.06■□□□□ 0.32
RFX4Q33E94 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
RFX4Q33E94 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
RFX4Q33E94 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RFX4Q33E94 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
RFX4Q33E94 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
RFX4Q33E94 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RFX4Q33E94 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RFX4Q33E94 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
RFX4Q33E94 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
RFX4Q33E94 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RFX4Q33E94 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
RFX4Q33E94 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
RFX4Q33E94 AL355802.2-201ENST00000402069 882 ntBASIC17.06■□□□□ 0.32
RFX4Q33E94 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
RFX4Q33E94 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC17.06■□□□□ 0.32
RFX4Q33E94 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
RFX4Q33E94 GLRB-205ENST00000512619 728 ntTSL 3 BASIC17.06■□□□□ 0.32
RFX4Q33E94 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC17.06■□□□□ 0.32
RFX4Q33E94 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC17.06■□□□□ 0.32
RFX4Q33E94 KLF13-207ENST00000560473 489 ntTSL 3 BASIC17.06■□□□□ 0.32
RFX4Q33E94 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
RFX4Q33E94 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC17.06■□□□□ 0.32
RFX4Q33E94 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RFX4Q33E94 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC17.06■□□□□ 0.32
RFX4Q33E94 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC17.06■□□□□ 0.32
RFX4Q33E94 AC069544.1-201ENST00000609399 999 ntBASIC17.06■□□□□ 0.32
RFX4Q33E94 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC17.06■□□□□ 0.32
RFX4Q33E94 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC17.06■□□□□ 0.32
RFX4Q33E94 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
RFX4Q33E94 AC108860.2-201ENST00000562760 2183 ntBASIC17.06■□□□□ 0.32
RFX4Q33E94 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
RFX4Q33E94 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms