Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
CLRN1P58418 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC16.41■□□□□ 0.22
CLRN1P58418 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CLRN1P58418 AL390961.4-201ENST00000623958 2535 ntBASIC16.41■□□□□ 0.22
CLRN1P58418 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
CLRN1P58418 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
CLRN1P58418 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLRN1P58418 ILF2-202ENST00000368681 726 ntTSL 2 BASIC16.41■□□□□ 0.22
CLRN1P58418 HMGA1P5-201ENST00000412453 271 ntBASIC16.41■□□□□ 0.22
CLRN1P58418 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
CLRN1P58418 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC16.41■□□□□ 0.22
CLRN1P58418 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC16.41■□□□□ 0.22
CLRN1P58418 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC16.41■□□□□ 0.22
CLRN1P58418 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC16.41■□□□□ 0.22
CLRN1P58418 AC112497.1-201ENST00000624824 639 ntBASIC16.41■□□□□ 0.22
CLRN1P58418 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CLRN1P58418 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLRN1P58418 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CLRN1P58418 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CLRN1P58418 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC16.41■□□□□ 0.22
CLRN1P58418 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLRN1P58418 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLRN1P58418 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
CLRN1P58418 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
CLRN1P58418 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLRN1P58418 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CLRN1P58418 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
CLRN1P58418 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
CLRN1P58418 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLRN1P58418 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLRN1P58418 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLRN1P58418 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CLRN1P58418 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
CLRN1P58418 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLRN1P58418 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLRN1P58418 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLRN1P58418 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CLRN1P58418 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLRN1P58418 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
CLRN1P58418 GRAMD4P1-201ENST00000435181 1110 ntBASIC16.4■□□□□ 0.22
CLRN1P58418 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC16.4■□□□□ 0.22
CLRN1P58418 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
CLRN1P58418 AC009065.1-201ENST00000564055 1225 ntBASIC16.4■□□□□ 0.22
CLRN1P58418 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
CLRN1P58418 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CLRN1P58418 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CLRN1P58418 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLRN1P58418 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLRN1P58418 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CLRN1P58418 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CLRN1P58418 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC16.4■□□□□ 0.22
CLRN1P58418 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
CLRN1P58418 KRT18P22-201ENST00000402024 1347 ntBASIC16.4■□□□□ 0.22
CLRN1P58418 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLRN1P58418 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC16.4■□□□□ 0.22
CLRN1P58418 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC16.4■□□□□ 0.22
CLRN1P58418 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC16.4■□□□□ 0.22
CLRN1P58418 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CLRN1P58418 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC16.39■□□□□ 0.22
CLRN1P58418 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLRN1P58418 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLRN1P58418 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC16.39■□□□□ 0.21
CLRN1P58418 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLRN1P58418 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLRN1P58418 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLRN1P58418 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CLRN1P58418 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CLRN1P58418 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC16.39■□□□□ 0.21
CLRN1P58418 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLRN1P58418 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLRN1P58418 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC16.39■□□□□ 0.21
CLRN1P58418 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLRN1P58418 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLRN1P58418 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLRN1P58418 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
CLRN1P58418 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
CLRN1P58418 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CLRN1P58418 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC16.39■□□□□ 0.21
CLRN1P58418 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC16.39■□□□□ 0.21
CLRN1P58418 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC16.39■□□□□ 0.21
CLRN1P58418 NAT14-202ENST00000587400 416 ntTSL 5 BASIC16.39■□□□□ 0.21
CLRN1P58418 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
CLRN1P58418 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC16.39■□□□□ 0.21
CLRN1P58418 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
CLRN1P58418 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
CLRN1P58418 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLRN1P58418 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLRN1P58418 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CLRN1P58418 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLRN1P58418 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CLRN1P58418 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLRN1P58418 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
CLRN1P58418 AL163051.1-201ENST00000569214 1512 ntBASIC16.39■□□□□ 0.21
CLRN1P58418 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLRN1P58418 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC16.39■□□□□ 0.21
CLRN1P58418 ABALON-201ENST00000629058 1903 ntBASIC16.39■□□□□ 0.21
CLRN1P58418 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CLRN1P58418 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLRN1P58418 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLRN1P58418 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms