Protein–RNA interactions for Protein: P53671

LIMK2, LIM domain kinase 2, humanhuman

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK2P53671 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIMK2P53671 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC18.51■□□□□ 0.55
LIMK2P53671 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIMK2P53671 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIMK2P53671 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC18.51■□□□□ 0.55
LIMK2P53671 AL353719.1-201ENST00000566847 864 ntBASIC18.51■□□□□ 0.55
LIMK2P53671 AC008622.2-201ENST00000617006 1229 ntBASIC18.51■□□□□ 0.55
LIMK2P53671 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.51■□□□□ 0.55
LIMK2P53671 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC18.51■□□□□ 0.55
LIMK2P53671 FLYWCH1P1-201ENST00000460917 1874 ntBASIC18.51■□□□□ 0.55
LIMK2P53671 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIMK2P53671 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LIMK2P53671 TBC1D3P2-202ENST00000577902 1649 ntBASIC18.51■□□□□ 0.55
LIMK2P53671 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC18.51■□□□□ 0.55
LIMK2P53671 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIMK2P53671 AC067852.2-201ENST00000590513 2313 ntBASIC18.51■□□□□ 0.55
LIMK2P53671 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIMK2P53671 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LIMK2P53671 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIMK2P53671 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LIMK2P53671 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIMK2P53671 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LIMK2P53671 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.51■□□□□ 0.55
LIMK2P53671 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.51■□□□□ 0.55
LIMK2P53671 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIMK2P53671 ESPNP-201ENST00000270691 2015 ntBASIC18.5■□□□□ 0.55
LIMK2P53671 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIMK2P53671 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LIMK2P53671 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
LIMK2P53671 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIMK2P53671 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIMK2P53671 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC18.5■□□□□ 0.55
LIMK2P53671 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC18.5■□□□□ 0.55
LIMK2P53671 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LIMK2P53671 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC18.5■□□□□ 0.55
LIMK2P53671 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIMK2P53671 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIMK2P53671 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.5■□□□□ 0.55
LIMK2P53671 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC18.5■□□□□ 0.55
LIMK2P53671 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC18.5■□□□□ 0.55
LIMK2P53671 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
LIMK2P53671 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LIMK2P53671 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LIMK2P53671 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
LIMK2P53671 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIMK2P53671 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC18.5■□□□□ 0.55
LIMK2P53671 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIMK2P53671 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
LIMK2P53671 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC18.5■□□□□ 0.55
LIMK2P53671 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC18.5■□□□□ 0.55
LIMK2P53671 AC117947.1-201ENST00000427448 529 ntBASIC18.5■□□□□ 0.55
LIMK2P53671 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIMK2P53671 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC18.5■□□□□ 0.55
LIMK2P53671 AC063952.2-201ENST00000498792 1227 ntBASIC18.5■□□□□ 0.55
LIMK2P53671 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIMK2P53671 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC18.5■□□□□ 0.55
LIMK2P53671 LINC01238-205ENST00000567549 1107 ntBASIC18.5■□□□□ 0.55
LIMK2P53671 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.5■□□□□ 0.55
LIMK2P53671 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
LIMK2P53671 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LIMK2P53671 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LIMK2P53671 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
LIMK2P53671 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
LIMK2P53671 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC18.5■□□□□ 0.55
LIMK2P53671 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIMK2P53671 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC18.5■□□□□ 0.55
LIMK2P53671 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC18.5■□□□□ 0.55
LIMK2P53671 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMK2P53671 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC18.49■□□□□ 0.55
LIMK2P53671 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.49■□□□□ 0.55
LIMK2P53671 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMK2P53671 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC18.49■□□□□ 0.55
LIMK2P53671 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMK2P53671 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMK2P53671 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMK2P53671 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LIMK2P53671 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.49■□□□□ 0.55
LIMK2P53671 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMK2P53671 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
LIMK2P53671 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMK2P53671 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMK2P53671 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMK2P53671 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC18.49■□□□□ 0.55
LIMK2P53671 GXYLT1P6-201ENST00000456472 1187 ntBASIC18.49■□□□□ 0.55
LIMK2P53671 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC18.49■□□□□ 0.55
LIMK2P53671 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC18.49■□□□□ 0.55
LIMK2P53671 AC022616.7-201ENST00000525383 220 ntBASIC18.49■□□□□ 0.55
LIMK2P53671 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC18.49■□□□□ 0.55
LIMK2P53671 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC18.49■□□□□ 0.55
LIMK2P53671 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.49■□□□□ 0.55
LIMK2P53671 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LIMK2P53671 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LIMK2P53671 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC18.49■□□□□ 0.55
LIMK2P53671 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
LIMK2P53671 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LIMK2P53671 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMK2P53671 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
LIMK2P53671 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMK2P53671 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMK2P53671 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 67.9 ms