Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CX3CR1P49238 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
CX3CR1P49238 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC16.15■□□□□ 0.18
CX3CR1P49238 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CX3CR1P49238 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC16.15■□□□□ 0.18
CX3CR1P49238 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CX3CR1P49238 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CX3CR1P49238 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC16.15■□□□□ 0.18
CX3CR1P49238 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
CX3CR1P49238 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC16.15■□□□□ 0.18
CX3CR1P49238 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CX3CR1P49238 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
CX3CR1P49238 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CX3CR1P49238 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CX3CR1P49238 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CX3CR1P49238 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CX3CR1P49238 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CX3CR1P49238 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CX3CR1P49238 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CX3CR1P49238 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CX3CR1P49238 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC16.15■□□□□ 0.18
CX3CR1P49238 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC16.15■□□□□ 0.18
CX3CR1P49238 DHDH-203ENST00000522614 776 ntTSL 5 BASIC16.15■□□□□ 0.18
CX3CR1P49238 AC036111.1-201ENST00000533973 1582 ntBASIC16.15■□□□□ 0.18
CX3CR1P49238 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC16.15■□□□□ 0.18
CX3CR1P49238 MIR4674-201ENST00000582457 87 ntBASIC16.15■□□□□ 0.18
CX3CR1P49238 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC16.15■□□□□ 0.18
CX3CR1P49238 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC16.15■□□□□ 0.18
CX3CR1P49238 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC16.15■□□□□ 0.18
CX3CR1P49238 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CX3CR1P49238 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CX3CR1P49238 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CX3CR1P49238 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC16.15■□□□□ 0.18
CX3CR1P49238 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC16.15■□□□□ 0.18
CX3CR1P49238 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
CX3CR1P49238 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CX3CR1P49238 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CX3CR1P49238 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CX3CR1P49238 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
CX3CR1P49238 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC16.14■□□□□ 0.18
CX3CR1P49238 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC16.14■□□□□ 0.18
CX3CR1P49238 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CX3CR1P49238 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CX3CR1P49238 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CX3CR1P49238 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CX3CR1P49238 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC16.14■□□□□ 0.17
CX3CR1P49238 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC16.14■□□□□ 0.17
CX3CR1P49238 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CX3CR1P49238 CD276-201ENST00000318424 2738 ntTSL 5 BASIC16.14■□□□□ 0.17
CX3CR1P49238 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC16.14■□□□□ 0.17
CX3CR1P49238 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CX3CR1P49238 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC16.14■□□□□ 0.17
CX3CR1P49238 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CX3CR1P49238 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC16.14■□□□□ 0.17
CX3CR1P49238 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC16.14■□□□□ 0.17
CX3CR1P49238 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC16.14■□□□□ 0.17
CX3CR1P49238 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC16.14■□□□□ 0.17
CX3CR1P49238 TMEM191A-211ENST00000637163 1067 ntBASIC16.14■□□□□ 0.17
CX3CR1P49238 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CX3CR1P49238 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC16.14■□□□□ 0.17
CX3CR1P49238 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
CX3CR1P49238 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
CX3CR1P49238 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
CX3CR1P49238 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC16.14■□□□□ 0.17
CX3CR1P49238 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
CX3CR1P49238 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CX3CR1P49238 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CX3CR1P49238 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CX3CR1P49238 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CX3CR1P49238 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
CX3CR1P49238 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
CX3CR1P49238 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CX3CR1P49238 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC16.13■□□□□ 0.17
CX3CR1P49238 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
CX3CR1P49238 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CX3CR1P49238 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC16.13■□□□□ 0.17
CX3CR1P49238 KRT8P50-201ENST00000562022 1438 ntBASIC16.13■□□□□ 0.17
CX3CR1P49238 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
CX3CR1P49238 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC16.13■□□□□ 0.17
CX3CR1P49238 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
CX3CR1P49238 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CX3CR1P49238 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
CX3CR1P49238 HIST1H2APS4-201ENST00000362070 348 ntBASIC16.13■□□□□ 0.17
CX3CR1P49238 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
CX3CR1P49238 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CX3CR1P49238 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC16.13■□□□□ 0.17
CX3CR1P49238 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CX3CR1P49238 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC16.13■□□□□ 0.17
CX3CR1P49238 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CX3CR1P49238 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC16.13■□□□□ 0.17
CX3CR1P49238 AP000525.1-201ENST00000608286 694 ntBASIC16.13■□□□□ 0.17
CX3CR1P49238 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC16.13■□□□□ 0.17
CX3CR1P49238 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CX3CR1P49238 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC16.13■□□□□ 0.17
CX3CR1P49238 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC16.13■□□□□ 0.17
CX3CR1P49238 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC16.13■□□□□ 0.17
CX3CR1P49238 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CX3CR1P49238 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC16.13■□□□□ 0.17
CX3CR1P49238 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CX3CR1P49238 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms