Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SOX3P41225 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SOX3P41225 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SOX3P41225 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SOX3P41225 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC17.28■□□□□ 0.36
SOX3P41225 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC17.28■□□□□ 0.36
SOX3P41225 LTBR-211ENST00000543190 785 ntTSL 3 BASIC17.28■□□□□ 0.36
SOX3P41225 AL441883.1-201ENST00000566170 1045 ntBASIC17.28■□□□□ 0.36
SOX3P41225 NEK4P2-201ENST00000580004 1012 ntBASIC17.28■□□□□ 0.36
SOX3P41225 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC17.28■□□□□ 0.36
SOX3P41225 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC17.28■□□□□ 0.36
SOX3P41225 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
SOX3P41225 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
SOX3P41225 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
SOX3P41225 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SOX3P41225 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SOX3P41225 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
SOX3P41225 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
SOX3P41225 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC17.28■□□□□ 0.36
SOX3P41225 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SOX3P41225 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SOX3P41225 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC17.28■□□□□ 0.36
SOX3P41225 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SOX3P41225 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
SOX3P41225 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC17.27■□□□□ 0.36
SOX3P41225 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SOX3P41225 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
SOX3P41225 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC17.27■□□□□ 0.36
SOX3P41225 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
SOX3P41225 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SOX3P41225 ARMC10P1-201ENST00000313754 855 ntBASIC17.27■□□□□ 0.36
SOX3P41225 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
SOX3P41225 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SOX3P41225 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC17.27■□□□□ 0.36
SOX3P41225 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC17.27■□□□□ 0.36
SOX3P41225 AC092647.4-201ENST00000457211 535 ntBASIC17.27■□□□□ 0.36
SOX3P41225 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SOX3P41225 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC17.27■□□□□ 0.36
SOX3P41225 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC17.27■□□□□ 0.36
SOX3P41225 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC17.27■□□□□ 0.36
SOX3P41225 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC17.27■□□□□ 0.36
SOX3P41225 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
SOX3P41225 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SOX3P41225 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SOX3P41225 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
SOX3P41225 AC090340.1-201ENST00000620778 4980 ntBASIC17.27■□□□□ 0.35
SOX3P41225 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC17.27■□□□□ 0.35
SOX3P41225 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SOX3P41225 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.27■□□□□ 0.35
SOX3P41225 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC17.27■□□□□ 0.35
SOX3P41225 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC17.27■□□□□ 0.35
SOX3P41225 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
SOX3P41225 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
SOX3P41225 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.35
SOX3P41225 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
SOX3P41225 AC008556.1-201ENST00000610908 2040 ntBASIC17.26■□□□□ 0.35
SOX3P41225 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.26■□□□□ 0.35
SOX3P41225 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SOX3P41225 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SOX3P41225 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
SOX3P41225 KRT8P32-201ENST00000512863 1461 ntBASIC17.26■□□□□ 0.35
SOX3P41225 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.26■□□□□ 0.35
SOX3P41225 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.26■□□□□ 0.35
SOX3P41225 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SOX3P41225 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SOX3P41225 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SOX3P41225 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.26■□□□□ 0.35
SOX3P41225 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC17.26■□□□□ 0.35
SOX3P41225 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC17.26■□□□□ 0.35
SOX3P41225 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SOX3P41225 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC17.26■□□□□ 0.35
SOX3P41225 LINC01238-205ENST00000567549 1107 ntBASIC17.26■□□□□ 0.35
SOX3P41225 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SOX3P41225 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
SOX3P41225 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SOX3P41225 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SOX3P41225 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SOX3P41225 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SOX3P41225 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SOX3P41225 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC17.26■□□□□ 0.35
SOX3P41225 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SOX3P41225 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
SOX3P41225 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
SOX3P41225 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SOX3P41225 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SOX3P41225 AL109659.2-201ENST00000606809 1674 ntBASIC17.26■□□□□ 0.35
SOX3P41225 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SOX3P41225 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SOX3P41225 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SOX3P41225 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.25■□□□□ 0.35
SOX3P41225 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SOX3P41225 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SOX3P41225 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
SOX3P41225 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SOX3P41225 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC17.25■□□□□ 0.35
SOX3P41225 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC17.25■□□□□ 0.35
SOX3P41225 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SOX3P41225 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SOX3P41225 ENSA-205ENST00000361532 792 ntTSL 2 BASIC17.25■□□□□ 0.35
SOX3P41225 GUK1-204ENST00000366721 689 ntTSL 3 BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms