Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC21.01■□□□□ 0.95
SMARCA1P28370 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SMARCA1P28370 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
SMARCA1P28370 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SMARCA1P28370 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC21.01■□□□□ 0.95
SMARCA1P28370 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SMARCA1P28370 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
SMARCA1P28370 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC21.01■□□□□ 0.95
SMARCA1P28370 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC21.01■□□□□ 0.95
SMARCA1P28370 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SMARCA1P28370 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SMARCA1P28370 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
SMARCA1P28370 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC21.01■□□□□ 0.95
SMARCA1P28370 UBC-206ENST00000538617 1303 ntTSL 5 BASIC21.01■□□□□ 0.95
SMARCA1P28370 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SMARCA1P28370 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SMARCA1P28370 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SMARCA1P28370 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SMARCA1P28370 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
SMARCA1P28370 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SMARCA1P28370 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC21■□□□□ 0.95
SMARCA1P28370 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
SMARCA1P28370 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC21■□□□□ 0.95
SMARCA1P28370 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC21■□□□□ 0.95
SMARCA1P28370 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SMARCA1P28370 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC21■□□□□ 0.95
SMARCA1P28370 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SMARCA1P28370 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
SMARCA1P28370 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
SMARCA1P28370 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC21■□□□□ 0.95
SMARCA1P28370 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SMARCA1P28370 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SMARCA1P28370 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC21■□□□□ 0.95
SMARCA1P28370 UPK3BP1-201ENST00000428678 509 ntBASIC21■□□□□ 0.95
SMARCA1P28370 TSSC2-201ENST00000450217 709 ntBASIC21■□□□□ 0.95
SMARCA1P28370 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC21■□□□□ 0.95
SMARCA1P28370 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
SMARCA1P28370 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC21■□□□□ 0.95
SMARCA1P28370 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC21■□□□□ 0.95
SMARCA1P28370 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SMARCA1P28370 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
SMARCA1P28370 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SMARCA1P28370 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
SMARCA1P28370 EFTUD1P1-204ENST00000560401 1798 ntBASIC21■□□□□ 0.95
SMARCA1P28370 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SMARCA1P28370 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SMARCA1P28370 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC20.99■□□□□ 0.95
SMARCA1P28370 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
SMARCA1P28370 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SMARCA1P28370 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SMARCA1P28370 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC20.99■□□□□ 0.95
SMARCA1P28370 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SMARCA1P28370 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
SMARCA1P28370 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SMARCA1P28370 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC20.99■□□□□ 0.95
SMARCA1P28370 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SMARCA1P28370 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SMARCA1P28370 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.99■□□□□ 0.95
SMARCA1P28370 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SMARCA1P28370 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SMARCA1P28370 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
SMARCA1P28370 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SMARCA1P28370 KRT18P65-201ENST00000439811 1286 ntBASIC20.99■□□□□ 0.95
SMARCA1P28370 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC20.99■□□□□ 0.95
SMARCA1P28370 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC20.99■□□□□ 0.95
SMARCA1P28370 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SMARCA1P28370 DUTP2-201ENST00000519164 463 ntBASIC20.99■□□□□ 0.95
SMARCA1P28370 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC20.99■□□□□ 0.95
SMARCA1P28370 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC20.99■□□□□ 0.95
SMARCA1P28370 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SMARCA1P28370 NPAP1P7-201ENST00000613027 823 ntBASIC20.99■□□□□ 0.95
SMARCA1P28370 AC009154.2-201ENST00000621177 724 ntBASIC20.99■□□□□ 0.95
SMARCA1P28370 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SMARCA1P28370 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
SMARCA1P28370 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SMARCA1P28370 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SMARCA1P28370 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC20.99■□□□□ 0.95
SMARCA1P28370 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
SMARCA1P28370 MADD-208ENST00000405573 1823 ntTSL 5 BASIC20.99■□□□□ 0.95
SMARCA1P28370 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
SMARCA1P28370 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC20.99■□□□□ 0.95
SMARCA1P28370 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SMARCA1P28370 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
SMARCA1P28370 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC20.98■□□□□ 0.95
SMARCA1P28370 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
SMARCA1P28370 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SMARCA1P28370 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
SMARCA1P28370 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
SMARCA1P28370 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC20.98■□□□□ 0.95
SMARCA1P28370 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SMARCA1P28370 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC20.98■□□□□ 0.95
SMARCA1P28370 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SMARCA1P28370 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC20.98■□□□□ 0.95
SMARCA1P28370 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SMARCA1P28370 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
SMARCA1P28370 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC20.98■□□□□ 0.95
SMARCA1P28370 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
SMARCA1P28370 GUSBP12-201ENST00000513727 720 ntBASIC20.98■□□□□ 0.95
SMARCA1P28370 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC20.98■□□□□ 0.95
SMARCA1P28370 AL353801.3-201ENST00000609898 542 ntBASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms