Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGB1P09429 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGB1P09429 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGB1P09429 AC113347.1-201ENST00000413321 391 ntBASIC21.65■■□□□ 1.06
HMGB1P09429 ATP5G1P1-201ENST00000448724 379 ntBASIC21.65■■□□□ 1.06
HMGB1P09429 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGB1P09429 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC21.65■■□□□ 1.06
HMGB1P09429 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
HMGB1P09429 AC005363.2-201ENST00000618631 242 ntBASIC21.65■■□□□ 1.06
HMGB1P09429 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC21.65■■□□□ 1.06
HMGB1P09429 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGB1P09429 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGB1P09429 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC21.65■■□□□ 1.06
HMGB1P09429 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
HMGB1P09429 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGB1P09429 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGB1P09429 AC099343.3-201ENST00000605834 2503 ntBASIC21.65■■□□□ 1.06
HMGB1P09429 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGB1P09429 AL096828.2-201ENST00000567259 1965 ntBASIC21.65■■□□□ 1.06
HMGB1P09429 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
HMGB1P09429 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
HMGB1P09429 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
HMGB1P09429 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
HMGB1P09429 AC007613.1-201ENST00000572811 2597 ntBASIC21.64■■□□□ 1.06
HMGB1P09429 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
HMGB1P09429 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
HMGB1P09429 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.06
HMGB1P09429 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC21.64■■□□□ 1.06
HMGB1P09429 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
HMGB1P09429 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
HMGB1P09429 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
HMGB1P09429 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
HMGB1P09429 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
HMGB1P09429 KIRREL3-AS3-201ENST00000404882 831 ntBASIC21.64■■□□□ 1.05
HMGB1P09429 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
HMGB1P09429 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC21.64■■□□□ 1.05
HMGB1P09429 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
HMGB1P09429 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
HMGB1P09429 AC010203.1-204ENST00000548782 407 ntBASIC21.64■■□□□ 1.05
HMGB1P09429 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC21.64■■□□□ 1.05
HMGB1P09429 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
HMGB1P09429 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
HMGB1P09429 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC21.64■■□□□ 1.05
HMGB1P09429 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
HMGB1P09429 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
HMGB1P09429 AL024508.2-201ENST00000607749 1894 ntBASIC21.64■■□□□ 1.05
HMGB1P09429 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
HMGB1P09429 LGALS8-AS1-201ENST00000487567 1457 ntBASIC21.64■■□□□ 1.05
HMGB1P09429 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
HMGB1P09429 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
HMGB1P09429 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
HMGB1P09429 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
HMGB1P09429 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
HMGB1P09429 LINC01126-201ENST00000623515 1646 ntBASIC21.63■■□□□ 1.05
HMGB1P09429 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
HMGB1P09429 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
HMGB1P09429 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
HMGB1P09429 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC21.63■■□□□ 1.05
HMGB1P09429 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
HMGB1P09429 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
HMGB1P09429 AC034232.1-201ENST00000506026 1064 ntBASIC21.63■■□□□ 1.05
HMGB1P09429 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC21.63■■□□□ 1.05
HMGB1P09429 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
HMGB1P09429 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC21.63■■□□□ 1.05
HMGB1P09429 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC21.63■■□□□ 1.05
HMGB1P09429 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC21.63■■□□□ 1.05
HMGB1P09429 AC008687.5-201ENST00000593746 558 ntBASIC21.63■■□□□ 1.05
HMGB1P09429 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
HMGB1P09429 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC21.63■■□□□ 1.05
HMGB1P09429 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
HMGB1P09429 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
HMGB1P09429 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC21.63■■□□□ 1.05
HMGB1P09429 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
HMGB1P09429 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
HMGB1P09429 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
HMGB1P09429 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
HMGB1P09429 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC21.63■■□□□ 1.05
HMGB1P09429 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
HMGB1P09429 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC21.63■■□□□ 1.05
HMGB1P09429 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC21.62■■□□□ 1.05
HMGB1P09429 REXO1L9P-201ENST00000604264 2108 ntBASIC21.62■■□□□ 1.05
HMGB1P09429 AC138028.4-201ENST00000564984 1845 ntBASIC21.62■■□□□ 1.05
HMGB1P09429 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
HMGB1P09429 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
HMGB1P09429 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC21.62■■□□□ 1.05
HMGB1P09429 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
HMGB1P09429 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC21.62■■□□□ 1.05
HMGB1P09429 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
HMGB1P09429 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC21.62■■□□□ 1.05
HMGB1P09429 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC21.62■■□□□ 1.05
HMGB1P09429 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC21.62■■□□□ 1.05
HMGB1P09429 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC21.62■■□□□ 1.05
HMGB1P09429 AC140113.3-201ENST00000605663 199 ntBASIC21.62■■□□□ 1.05
HMGB1P09429 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
HMGB1P09429 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC21.62■■□□□ 1.05
HMGB1P09429 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
HMGB1P09429 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
HMGB1P09429 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC21.62■■□□□ 1.05
HMGB1P09429 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
HMGB1P09429 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms