Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC17.92■□□□□ 0.46
SDC3O75056 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC17.92■□□□□ 0.46
SDC3O75056 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC17.92■□□□□ 0.46
SDC3O75056 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SDC3O75056 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SDC3O75056 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
SDC3O75056 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC17.92■□□□□ 0.46
SDC3O75056 HES2-202ENST00000377836 507 ntTSL 2 BASIC17.92■□□□□ 0.46
SDC3O75056 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SDC3O75056 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC17.92■□□□□ 0.46
SDC3O75056 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC17.92■□□□□ 0.46
SDC3O75056 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC17.92■□□□□ 0.46
SDC3O75056 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC17.92■□□□□ 0.46
SDC3O75056 CCNC-219ENST00000627680 896 ntTSL 5 BASIC17.92■□□□□ 0.46
SDC3O75056 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SDC3O75056 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SDC3O75056 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.92■□□□□ 0.46
SDC3O75056 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SDC3O75056 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
SDC3O75056 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SDC3O75056 KRT89P-201ENST00000620027 1478 ntBASIC17.92■□□□□ 0.46
SDC3O75056 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
SDC3O75056 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
SDC3O75056 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
SDC3O75056 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SDC3O75056 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SDC3O75056 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SDC3O75056 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC17.91■□□□□ 0.46
SDC3O75056 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC17.91■□□□□ 0.46
SDC3O75056 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SDC3O75056 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC17.91■□□□□ 0.46
SDC3O75056 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC17.91■□□□□ 0.46
SDC3O75056 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SDC3O75056 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
SDC3O75056 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
SDC3O75056 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC17.91■□□□□ 0.46
SDC3O75056 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
SDC3O75056 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
SDC3O75056 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SDC3O75056 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SDC3O75056 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SDC3O75056 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SDC3O75056 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SDC3O75056 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC17.91■□□□□ 0.46
SDC3O75056 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC17.91■□□□□ 0.46
SDC3O75056 CDV3-207ENST00000508481 661 ntTSL 3 BASIC17.91■□□□□ 0.46
SDC3O75056 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC17.91■□□□□ 0.46
SDC3O75056 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SDC3O75056 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC17.91■□□□□ 0.46
SDC3O75056 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SDC3O75056 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
SDC3O75056 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SDC3O75056 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SDC3O75056 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SDC3O75056 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
SDC3O75056 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SDC3O75056 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.9■□□□□ 0.46
SDC3O75056 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SDC3O75056 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SDC3O75056 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SDC3O75056 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SDC3O75056 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SDC3O75056 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SDC3O75056 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SDC3O75056 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
SDC3O75056 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SDC3O75056 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SDC3O75056 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SDC3O75056 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SDC3O75056 LSM5-204ENST00000409909 740 ntTSL 2 BASIC17.9■□□□□ 0.46
SDC3O75056 TSPY12P-201ENST00000421279 868 ntBASIC17.9■□□□□ 0.46
SDC3O75056 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.9■□□□□ 0.46
SDC3O75056 SAPCD2P3-201ENST00000455031 850 ntBASIC17.9■□□□□ 0.46
SDC3O75056 AC106795.1-205ENST00000512851 1056 ntBASIC17.9■□□□□ 0.46
SDC3O75056 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC17.9■□□□□ 0.46
SDC3O75056 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC17.9■□□□□ 0.46
SDC3O75056 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
SDC3O75056 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC17.9■□□□□ 0.46
SDC3O75056 AL662844.1-201ENST00000546340 181 ntBASIC17.9■□□□□ 0.46
SDC3O75056 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC17.9■□□□□ 0.46
SDC3O75056 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SDC3O75056 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SDC3O75056 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SDC3O75056 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SDC3O75056 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
SDC3O75056 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SDC3O75056 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
SDC3O75056 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC17.9■□□□□ 0.46
SDC3O75056 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
SDC3O75056 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SDC3O75056 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
SDC3O75056 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.89■□□□□ 0.45
SDC3O75056 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SDC3O75056 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SDC3O75056 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SDC3O75056 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SDC3O75056 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC17.89■□□□□ 0.45
SDC3O75056 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC17.89■□□□□ 0.45
SDC3O75056 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SDC3O75056 AP000593.1-201ENST00000393668 712 ntBASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms